By Professor Torsten Thomas

Journal articles

Egan S; Torsten T; Holmstrom CG; Kjelleberg S, 2000, 'Phylogenetic relationship and antifouling activity of bacterial epiphytes from the marine alga Ulva lactuca', Environmental Microbiology, 2, pp. 343 - 347

Berchet V; Torsten T; Cavicchioli R; Russell NJ; Gounot A, 2000, 'Structural analysis of the elongation factor G protein from the low-temperature-adapted bacterium Arthrobacter globiformis S155', Extremophiles, 4, pp. 123 - 130

Torsten T; Cavicchioli R, 1998, 'Archaeal cold-adapted proteins: structural and evolutionary analysis of the elongation factor 2 proteins from psychrophilic, mesophilic and thermophilic proteins', FEBS Letters, 439, pp. 281 - 286

Conference Papers

Ozkan J; Majzoub M; Coroneo M; Thomas T; Willcox M, 2023, 'Ocular microbiome changes in dry eye disease and meibomian gland dysfunction', Germany, presented at Symposium: The Human Microbiome, European Molecular Biology Laboratory (EMBL), Germany, 20 September 2023

Ozkan J, 2023, 'The conjunctival and lid margin microbiome in meibomian and lacrimal gland dysfunction', USA, presented at Association for Research in Vision and Ophthalmology, USA, 23 April 2023

McKay IR; Coffey MJ; Doumit M; Bramley L; Sharp M; Kasparian N; Chuang S; Stelzer-Braid S; Waters S; Thomas T; Jaffe A; Katz TE; Ooi CY, 2019, 'A GUT FEELING: CORRELATING DIETARY INTAKE WITH THE GASTROINTESTINAL AND RESPIRATORY MICROBIOTA IN CYSTIC FIBROSIS', in PEDIATRIC PULMONOLOGY, WILEY, pp. S261 - S262, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000484544000375&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Coffey MJ; Zhong L; Jaffe A; Ooi CY; Waters S, 2019, 'THE INTESTINAL PROTEOME IN CHILDREN WITH CYSTIC FIBROSIS DIFFERS FROM HEALTHY CONTROLS', in PEDIATRIC PULMONOLOGY, WILEY, pp. S265 - S265, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000484544000385&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Coffey MJ; Nielsen S; Wemheuer B; Garg M; Needham B; Jaffe A; Thomas T; Ooi CY, 2019, 'TAXONOMIC AND FUNCTIONAL INTESTINAL DYSBIOSIS IN CHILDREN WITH CYSTIC FIBROSIS', in GASTROENTEROLOGY, W B SAUNDERS CO-ELSEVIER INC, CA, San Diego, pp. S895 - S895, presented at Digestive Disease Week (DDW), CA, San Diego, 18 May 2019 - 21 May 2019

Ozkan J; Willcox M; Wemheuer B; Wilcsek G; Coroneo M; Thomas T, 2018, 'The biogeography of the human ocular microbiota', in Ocular Surface, Elsevier, Heidelberg, Germany, pp. 111 - 118, presented at European Molecular Biology Organisation/European Molecular Biology Laboratory Symposia - The Human Microbiome, Heidelberg, Germany, 16 September 2018 - 19 September 2018, http://dx.doi.org/10.1016/j.jtos.2018.11.005

Cone S; Larkin G; Poulton C; Wemheuer B; Thomas T; Lemberg D; Gupta N; Leach ST; Coffey MJ; Ooi CY, 2018, 'Functional dysbiosis of the gut microbiota in childhood irritable bowel syndrome', in JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY, WILEY, pp. 144 - 145, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000530647800253&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Ozkan J; Willcox M; Wemheuer B; Thomas T; Coroneo M, 2018, 'What is hiding in your eyes? The microbiome of ocular surface niches', in Investigative Ophthalmology & Visual Science, Association for Research in Vision and Ophthalmology, HI, Honolulu, presented at The Association for Research in Vision and Ophthalmology, HI, Honolulu, 29 April 2018 - 03 May 2018

Ozkan J; Diez-Vives C; Nielsen S; Coroneo M; Thomas T; Willcox M, 2017, 'A Statistical Model to Filter Contaminant Bacteria in Ocular Microbiome Studies', Portland, Oregon, USA, presented at International Society for Contact Lens Research, Portland, Oregon, USA, 13 August 2017 - 18 August 2017

Ozkan J; Diez-Vives C; Nielsen S; Thomas T; Coroneo M; Willcox M, 2017, 'The Temporal Stability and the Ocular Surface Microbiome', in INVESTIGATIVE OPHTHALMOLOGY & VISUAL SCIENCE, ASSOC RESEARCH VISION OPHTHALMOLOGY INC, Baltimore, Maryland, USA, presented at the Association for Research in Vision and Ophthalmology, Baltimore, Maryland, USA, 07 May 2017 - 11 May 2017

Kaakoush NO; Thomas T; Day AS; Leach ST; Lemberg D; Dowd S; Mitchell HM, 2012, 'MICROBIAL DYSBIOSIS IN PEDIATRIC PATIENTS WITH CROHN'S DISEASE', in HELICOBACTER, WILEY-BLACKWELL, SLOVENIA, Ljubljana, pp. 92 - 92, presented at 25th International Workshop on Helicobacter and Related Bacteria in Chronic Digestive Inflammation and Gastric Cancer, SLOVENIA, Ljubljana, 13 September 2012 - 15 September 2012, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000308581600103&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Jacqueline T; Thomas T; Stuetz RM; Ashbolt NJ, 2011, 'The risk of Free-living amoebe interaction bacterial pathogens in drinking water', in Conference Proceedings, WaterMicro 2011, Rotorua, NZ, presented at Proceeding 16th International Symposium on Health-Related Microbiology, Rotorua, NZ, 18 September 2011 - 23 September 2011

Thomas J; Storey M; Thomas T; Stuetz RM; Ashbolt NJ, 2010, 'Diversity of free-living amoebal pathogen hosts in a dual distribution (drinking and recycled) water system', in Proceedings Water Quality Technology Conference, American Water Works Association (Curran Associates), Washington, presented at Water Quality Technology Conference and Exposition 2010, Savannah, Georgia U.S.A, 14 November 2010 - 18 November 2010

Thomas T; Lim J; March PE; Tillett D; Wiedemann P, 2002, 'A new approach to high through-put DNA sequencing: dLUTE SEQ a method for nanolitre scale reactions', in Takayama K (ed.), School BABS 1st Annual Symposium, Sydney, presented at School of Biotechnology and Biomolecular Sciences 1st Annual Symposium, Sydney, 08 November 2002

Demaere MZ; Lim J; March PE; Thomas T; Tillett D; Wiedemann P; Karunate S, 2002, 'A new approach to high through-put DNA sequencing: UniSEQ a universal approach to primer walking', in Takayama K (ed.), School BABS 1st Annual Symposium, Sydney, presented at School of Biotechnology and Biomolecular Sciences 1st Annual Symposium, Sydney, 08 November 2002

Conference Presentations

Ozkan J; Majzoub M; Coroneo M; Thomas T; Willcox M, 2022, 'The effect of face mask wear on the ocular surface and contact lens microbiome', presented at 21st International Society for Contact Lens Research (ISCLR) Symposium,, 22 August 2022

Ozkan J; Majzoub M; Coroneo M; Thomas T; Willcox M, 2022, 'The comparative ocular surface tissue microbiome in human, mouse, rabbit and guinea pig', presented at Association for Research in Vision and Ophthalmology, 02 May 2022

van Dorst J; McKay I; Coffey M; Doumit M; Paida K; Jaffe A; Thomas T; Katz T; Ooi CY, 2021, 'WS02.4 Evaluating the role of short chain fatty acids in cystic fibrosis', http://dx.doi.org/10.1016/s1569-1993(21)00924-3

Ozkan J; Willcox M; Sandbach J; Coroneo M; Thomas T, 2020, 'Contamination of intravitreal needles by the ocular surface microbiome', presented at Association for Research in Vision and Ophthalmology, 03 May 2020

van Dorst J; McKay I; Coffey M; Doumit M; Bramley L; Paida K; Jaffe A; Thomas T; Katz T; Ooi CY, 2020, 'WS03.6 Does the cystic fibrosis diet contribute to intestinal dysbiosis?', http://dx.doi.org/10.1016/s1569-1993(20)30182-x

Conference Abstracts

van Dorst J; McKay IR; Coffey MJ; Doumit M; Paida K; Jaffe A; Thomas T; Katz TE; Ooi C, 2020, 'CAN THE DIET MODULATE THE GUT-LUNG AXIS AND IMPROVE HEALTH OUTCOMES IN CYSTIC FIBROSIS?', in PEDIATRIC PULMONOLOGY, WILEY, Vol. 55, pp. S135 - S135, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000575294100246&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Ozkan J; Willcox M; Sandbach J; Coroneo M; Thomas T, 2020, 'Bacterial contamination of intravitreal needles by the ocular surface microbiome', in Investigative Ophthalmology and Visual Science, Association for Research in Vision and Ophthalmology, Baltimore, USA, presented at Association for Research in Vision and Ophthalmology, Baltimore, USA, https://iovs.arvojournals.org/article.aspx?articleid=2766501

Paida K; Mckay I; Coffey M; Doumit M; Bramley L; Sharp M; Kasparian N; Chuang S; Thomas T; Jaffe A; Katz T; Ooi K, 2020, 'GUT FEELING: PRELIMINARY CROSS-SECTIONAL FINDINGS OF A GUT-BRAIN AXIS IN PAEDIATRIC CYSTIC FIBROSIS PATIENTS', in RESPIROLOGY, WILEY, Vol. 25, pp. 69 - 69, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000538684200131&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Coffey MJ; Low I; Stelzer-Braid S; Wemheuer B; Garg M; Thomas T; Jaffe A; Rawlinson WD; Ooi CY, 2020, 'The intestinal virome in children with cystic fibrosis differs from healthy controls', in PLoS ONE, Vol. 15, http://dx.doi.org/10.1371/journal.pone.0233557

Coffey MJ; Low I; Stelzer-Braid S; Rawlinson W; Thomas T; Jaffe A; Ooi CY, 2019, 'THE INTESTINAL VIROME IN CHILDREN WITH CYSTIC FIBROSIS: A PILOT STUDY', in GASTROENTEROLOGY, W B SAUNDERS CO-ELSEVIER INC, CA, San Diego, Vol. 156, pp. S241 - S241, presented at Digestive Disease Week (DDW), CA, San Diego, 18 May 2019 - 21 May 2019, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000467106000635&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Egan S; Kumar V; Zozaya-Valdes ; Gardiner ME; Hudson J; Deshpande N; Campbell A; Thomas T, 2017, 'BREAKING BAD: OPPORTUNISTIC BACTERIAL PATHOGENS OF SEAWEEDS', in PHYCOLOGIA, INT PHYCOLOGICAL SOC, Vol. 56, pp. 48 - 48, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000412892000098&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Theses / Dissertations

Thomas T, 2000, Low-temperature adaptation of elongation factor 2 proteins from Archaea, University of New South Wales

Working Papers

Yadav S; Dudchenko O; Esvaran M; Rosen B; Field M; Skvortsova K; Gopalakrishnan S; Keilwagen J; Cochran B; Manandhar B; Bucknall M; Bustamante S; Rasmussen J; Melvin R; Omer A; Colaric Z; Chan E; Minoche A; Smith T; Gilbert T; Bogdanovic O; Zammit R; Thomas T; Aiden E; Ballard B; Edwards R, 2020, Desert Dingo (Canis lupus dingo) genome provides insights into their role in the Australian ecosystem, Cold Spring Harbor, http://dx.doi.org10.1101/2020.11.15.384057, https://www.biorxiv.org/content/10.1101/2020.11.15.384057v1

Preprints

Barno AR; Villela HDM; Cardoso PM; García FC; Cui G; Delgadillo-Ordoñez N; Rosado AS; Thomas T; Aranda M; Voolstra CR; Peixoto RS, 2024, Bacterial inoculation elicits changes to the coral epigenome, http://dx.doi.org/10.1101/2024.10.27.620496

Peixoto R; Ribeiro B; Garritano AN; Raimundo I; Nappi J; Garcias-Bonet N; Villela H; Thomas T; Klautau M, 2024, Not Only in Corals: Beneficial Microorganisms for Corals can also Be Enriched in Sponges, http://dx.doi.org/10.21203/rs.3.rs-4199775/v1

Liu R; Wei X; Wang L; Cao J; Song W; Wu J; Thomas T; Jin T; Wang Z; Wei W; Wei Y; Zhai H; Yao C; Shen Z; Fang J, 2021, Novel Chloroflexi Genomes From The Deepest Ocean Reveal Metabolic Strategies For The Adaptation To Deep-Sea Habitats, http://dx.doi.org/10.21203/rs.3.rs-254541/v2

Mills JG; Selway CA; Thomas T; Weyrich LS; Lowe AJ, 2021, School yard biodiversity determines short-term recovery of disturbed skin microbiota in children, http://dx.doi.org/10.1101/2021.06.18.448749

Liu R; Wei X; Wang L; Cao J; Song W; Wu J; Thomas T; Jin T; Wei W; Wei Y; Zhai H; Yao C; Shen Z; Fang J, 2021, Novel Chloroflexi genomes from the deepest ocean reveal metabolic strategies for the adaptation to deep-sea habitats, http://dx.doi.org/10.21203/rs.3.rs-254541/v1

Mills JG; Selway CA; Weyrich LS; Skelly C; Weinstein P; Thomas T; Young JM; Marczylo E; Yadav S; Yadav V; Lowe AJ; Breed MF, 2021, Rare genera differentiate urban green space soil bacterial communities in three cities across the world, http://dx.doi.org/10.1101/2021.02.21.432167

Vendl C; Nelson TM; Ferrari B; Thomas T; Rogers T, 2020, Highly abundant core taxa in the blow within and across captive bottlenose dolphins provide evidence for a temporally stable airway microbiota, http://dx.doi.org/10.21203/rs.3.rs-17418/v1

Glasl B; Bourne DG; Frade PR; Thomas T; Schaffelke B; Webster NS, 2019, Microbial predictors of environmental perturbations in coral reef ecosystems, http://dx.doi.org/10.1101/524173

Other

TILLETT D; THOMAS T, 2003, A METHOD OF SEQUESTERING AND/OR PURIFYING A POLYPEPTIDE

TILLETT D; THOMAS T, 2003, DNA AMPLIFICATION AND SEQUENCING IN COLLAPSIBLE EMULSIONS

TILLETT D; THOMAS T, 2003, OPTIMISATION OF PRIMER LIBRARIES BY EXTENSION OF SHORT PRIMERS

Tillett D; Thomas T, 2000, A METHOD FOR INCREASING THE AFFINITY OF AN OLIGONUCLEOTIDE FOR A TARGET NUCLEIC ACID, Google Patents

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