Select Publications

Preprints

Modolon F; Garritano AN; Hill LJ; Duarte G; Bendia AG; Moura RB; Pellizari VH; Thomas T; Peixoto R, 2025, Promiscuous endosymbionts in deep-sea corals and crinoids are shaped by nitrogen cycling, http://dx.doi.org/10.1101/2025.02.25.640168

Barno AR; Villela HDM; Cardoso PM; García FC; Cui G; Delgadillo-Ordoñez N; Rosado AS; Thomas T; Aranda M; Voolstra CR; Peixoto RS, 2024, Bacterial inoculation elicits changes to the coral epigenome, http://dx.doi.org/10.1101/2024.10.27.620496

Peixoto R; Ribeiro B; Garritano AN; Raimundo I; Nappi J; Garcias-Bonet N; Villela H; Thomas T; Klautau M, 2024, Not Only in Corals: Beneficial Microorganisms for Corals can also Be Enriched in Sponges, http://dx.doi.org/10.21203/rs.3.rs-4199775/v1

Liu R; Wei X; Wang L; Cao J; Song W; Wu J; Thomas T; Jin T; Wang Z; Wei W; Wei Y; Zhai H; Yao C; Shen Z; Fang J, 2021, Novel Chloroflexi Genomes From The Deepest Ocean Reveal Metabolic Strategies For The Adaptation To Deep-Sea Habitats, http://dx.doi.org/10.21203/rs.3.rs-254541/v2

Mills JG; Selway CA; Thomas T; Weyrich LS; Lowe AJ, 2021, School yard biodiversity determines short-term recovery of disturbed skin microbiota in children, http://dx.doi.org/10.1101/2021.06.18.448749

Shaffer JP; Nothias L-F; Thompson LR; Sanders JG; Salido RA; Couvillion SP; Brejnrod AD; Lejzerowicz F; Haiminen N; Huang S; Lutz HL; Zhu Q; Martino C; Morton JT; Karthikeyan S; Nothias-Esposito M; Dührkop K; Böcker S; Kim HW; Aksenov AA; Bittremieux W; Minich JJ; Marotz C; Bryant MM; Sanders K; Schwartz T; Humphrey G; Vásquez-Baeza Y; Tripathi A; Parida L; Carrieri AP; Beck KL; Das P; González A; McDonald D; Karst SM; Albertsen M; Ackermann G; DeReus J; Thomas T; Petras D; Shade A; Stegen J; Song SJ; Metz TO; Swafford AD; Dorrestein PC; Jansson JK; Gilbert JA; Knight R, 2021, Multi-omics profiling of Earth’s biomes reveals patterns of diversity and co-occurrence in microbial and metabolite composition across environments, http://dx.doi.org/10.1101/2021.06.04.446988

Liu R; Wei X; Wang L; Cao J; Song W; Wu J; Thomas T; Jin T; Wei W; Wei Y; Zhai H; Yao C; Shen Z; Fang J, 2021, Novel Chloroflexi genomes from the deepest ocean reveal metabolic strategies for the adaptation to deep-sea habitats, http://dx.doi.org/10.21203/rs.3.rs-254541/v1

Mills JG; Selway CA; Weyrich LS; Skelly C; Weinstein P; Thomas T; Young JM; Marczylo E; Yadav S; Yadav V; Lowe AJ; Breed MF, 2021, Rare genera differentiate urban green space soil bacterial communities in three cities across the world, http://dx.doi.org/10.1101/2021.02.21.432167

Vendl C; Nelson TM; Ferrari B; Thomas T; Rogers T, 2020, Highly abundant core taxa in the blow within and across captive bottlenose dolphins provide evidence for a temporally stable airway microbiota, http://dx.doi.org/10.21203/rs.3.rs-17418/v1

Glasl B; Bourne DG; Frade PR; Thomas T; Schaffelke B; Webster NS, 2019, Microbial predictors of environmental perturbations in coral reef ecosystems, http://dx.doi.org/10.1101/524173

Wemheuer F; Taylor J; Daniel R; Johnston E; Meinicke P; Thomas T; Wemheuer B, 2018, Tax4Fun2: a R-based tool for the rapid prediction of habitat-specific functional profiles and functional redundancy based on 16S rRNA gene marker gene sequences, http://dx.doi.org/10.1101/490037

Mcgeoch M; Latombe G; Andrew N; Nakagawa S; Nipperess D; Roige M; Marzinelli E; Campbell A; Vergés A; Thomas T; Steinberg P; Selwood K; Hui C, 2017, The application of zeta diversity as a continuous measure of compositional change in ecology, http://dx.doi.org/10.1101/216580


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