By Professor Miles Davenport

Journal articles

Davenport MP; Smith KJ; Barouch D; Reid SW; Bodnar WM; Willis AC; Hunt DF; Hill AVS, 1997, 'HLA class I binding motifs derived from random peptide libraries differ at the COOH terminus from those of eluted peptides', Journal of Experimental Medicine, 185, pp. 367 - 371, http://dx.doi.org/10.1084/jem.185.2.367

Davenport MP; Godkin A; Friede T; Stevanović S; Willis AC; Hill AVS; Rammensee HG, 1997, 'A distinctive peptide binding motif for HLA-DRB1(*)0407, an HLA-DR4 subtype not associated with rheumatoid arthritis', Immunogenetics, 45, pp. 229 - 232, http://dx.doi.org/10.1007/s002510050196

Davenport MP; Quinn CL; Valsasnini P; Sinigaglia F; Hill AVS; Bell JI, 1996, 'Analysis of peptide-binding motifs for two disease associated HLA-DR13 alleles using an M13 phage display library', Immunology, 88, pp. 482 - 486, http://dx.doi.org/10.1046/j.1365-2567.1996.d01-693.x

Davenport MP; Smith KJ; Hill AV, 1996, 'Evolution of allorecognition?', Immunology Today, 17, pp. 589 - 590, http://dx.doi.org/10.1016/S0167-5699(97)84208-9

Davenport MP; Hill AVS, 1996, 'Reverse immunogenetics: From HLA-disease associations to vaccine candidates', Molecular Medicine Today, 2, pp. 38 - 45, http://dx.doi.org/10.1016/1357-4310(96)88757-0

Barouch D; Davenport M; Mcmichael A; Reay P, 1995, 'A mAb against HLA-A2 can be influenced both positively and negatively by the associated peptide', International Immunology, 7, pp. 1599 - 1605, http://dx.doi.org/10.1093/intimm/7.10.1599

Davenport MP, 1995, 'The promiscuous B27 hypothesis', Lancet, 346, pp. 500 - 501, http://dx.doi.org/10.1016/S0140-6736(95)91348-3

Davenport MP; Quinn CL; Chicz RM; Green BN; Willis AC; Lane WS; Bell JI; Hill AVS, 1995, 'Naturally processed peptides from two disease-resistance-associated HLA-DR13 alleles show related sequence motifs and the effects of the dimorphism at position 86 of the HLA-DRβ chain', Proceedings of the National Academy of Sciences of the United States of America, 92, pp. 6567 - 6571

Davenport MP, 1995, 'Antagonists or altruists: do viral mutants modulate T-cell responses?', Immunology Today, 16, pp. 432 - 436, http://dx.doi.org/10.1016/0167-5699(95)80020-4

Davenport MP; Ho Shon IA; Hill AV, 1995, 'An empirical method for the prediction of T-cell epitopes', Immunogenetics, 42, pp. 392 - 397, http://www.ncbi.nlm.nih.gov/pubmed/7590973

Hill AVS; Yates SNR; Allsopp CEM; Gupta S; Gilbert SC; Lalvani A; Aidoo M; Davenport M; Plebanski M, 1994, 'Human leukocyte antigens and natural selection by malaria', Philosophical Transactions of the Royal Society B Biological Sciences, 346, pp. 379 - 383, http://dx.doi.org/10.1098/rstb.1994.0155

ROCHE PW; PEAKE PW; DAVENPORT MP; BRITTON WJ, 1994, 'Identification of a Mycobacterium leprae‐specific T cell epitope on the 70 kDa heat shock protein', Immunology and Cell Biology, 72, pp. 215 - 221, http://dx.doi.org/10.1111/j.1440-1711.1994.tb03780.x

Peake PW; Britton WJ; Davenport MP; Roche PW; McKenzie KR, 1993, 'Analysis of B-cell epitopes in the variable C-terminal region of the Mycobacterium leprae 70-kilodalton heat shock protein', Infection and Immunity, 61, pp. 135 - 141

Davenport MP; McKenzie KR; Basten A; Britton WJ, 1992, 'The variable C-terminal region of the Mycobacterium leprae 70-kilodalton heat shock protein is the target for humoral immune responses', Infection and Immunity, 60, pp. 1170 - 1177

Conference Papers

Pampena MB; Viox EG; Samer S; Hamilton JT; Docken SS; Keele BF; Davenport MP; Paiardini M; Bar KJ; Betts MR, 2023, 'Impact of CD4 binding-site bNAb therapy on virus-specific T cell immunity in barcoded TF-SHIV-infected rhesus macaques during antiretroviral treatment interruption', in JOURNAL OF MEDICAL PRIMATOLOGY, WILEY, pp. 332 - 333

Statzu M; Wong A; McBrien J; Choe Y; Enemuo C; Ngo J; Jimenez L; Wang J; Pinkevych M; Docken S; Davenport M; Keele B; Vanderford T; Paiardini M; Silvestri G; Kulpa D, 2022, 'CD8(+) T cell depletion does not affect viral reservoir size, but influences the rebound after ART interruption in SIV-infected rhesus macaques', in JOURNAL OF MEDICAL PRIMATOLOGY, WILEY, pp. 323 - 324, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000852720100075&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Lau JSY; Cromer D; Pinkevych M; Lewin SR; Rasmussen TA; McMahon JH; Davenport MP, 2022, 'Balancing Statistical Power and Risk in HIV Cure Clinical Trial Design', in Journal of Infectious Diseases, Oxford University Press (OUP), United States, pp. 236 - 245, United States, http://dx.doi.org/10.1093/infdis/jiac032

Okoye A; Duell D; Maxwel A; Brantley W; Marenco A; Lidell M; Behrens H; Selseth A; Varco-Merth B; Smedley J; Hesselgesser J; Geleziunas R; Pinkevych M; Davenport M; Axthelm M; Hansen S; Deeks S; Keele B; Lifson J; Picker L, 2018, 'CD8+T Cells Do Not Control SIV Replication During ART or Viral Relapse After ART Withdrawal', in AIDS RESEARCH AND HUMAN RETROVIRUSES, MARY ANN LIEBERT, INC, SPAIN, Madrid, pp. 33 - 33, presented at HIV Research for Prevention Meeting (HIVR4P) - AIDS Vaccine, Microbicide and ARV-Based Prevention Science, SPAIN, Madrid, 21 October 2018 - 25 October 2018, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000448371600042&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Davenport MP; Valkenburg S; Guillonneau C; Hubert F-X; Cukalac T; Curtis JM; Stambas J; Scott H; Venturi V; Kedzierski L; Kedzierska K, 2009, 'The absence of Aire does not alter the CD8 T cell repertoire to infection', in JOURNAL OF IMMUNOLOGY, AMER ASSOC IMMUNOLOGISTS, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000209763601194&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

RIBEIRO RM; PERELSON AS; CHAO DL; DAVENPORT MP, 2007, 'HIV EPIDEMIOLOGY AND THE IMPACT OF NONSTERILIZING VACCINES', in BIOMAT 2006, WORLD SCIENTIFIC, pp. 69 - 88, presented at International Symposium on Mathematical and Computational Biology, http://dx.doi.org/10.1142/9789812708779_0005

Conference Posters

Varco-Merth B; Chaunzwa M; Duell D; Marenco A; Docken S; Smedley J; Axthelm MK; Hansen SG; Davenport MP; Estes JD; Keele B; Lifson JD; Lewin SR; Okoye AA; Picker LJ, 2022, 'OP 2.5 – 00048 Targeting the SIV reservoir with Alemtuzumab', Vol. 8, pp. 100153 - 100153, http://dx.doi.org/10.1016/j.jve.2022.100153

Docken S; McCormick K; Pampena M; Pinkevych M; Viox E; Keele B; Paiardini M; Betts M; Bar K; Davenport M; Samer S; Cromer D; Schlub T, 2022, 'PP 2.3 – 00034 CD8+ T-Cell Sieving During SIV Reactivation from Latency', Vol. 8, pp. 100159 - 100159, http://dx.doi.org/10.1016/j.jve.2022.100159

Conference Abstracts

Gubser C; Rajdev L; Chiu C; Li S; Tumpach C; Pascoe RD; Durand C; Chang JJ; Solomon A; Cao R; Martelotto L; Bethony J; Utzschneider D; Kallies A; Davenport M; Anderson JL; Rasmussen TA; Schroeder J; Lewin SR, 2024, 'TCR repertoire diversity allows for expansion of HIV-specific CD8 T-cells following anti-PD1 in people with HIV and cancer on ART', in JOURNAL OF THE INTERNATIONAL AIDS SOCIETY, JOHN WILEY & SONS LTD, Vol. 27, pp. 4 - 4

Keele B; Okoye A; Immonen T; Pinkevych M; Fennessey C; Varco-Merth B; Davenport M; Lifson J; Picker L, 2022, 'Early antiretroviral therapy in SIV-infected rhesus macaques reveals a highly dynamic accumulation of the rebound competent viral reservoir', in JOURNAL OF MEDICAL PRIMATOLOGY, WILEY, Vol. 51, pp. 303 - 303, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000852720100032&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Pampena MB; Kuri-Cervantes L; Samer S; Wu V; Watkins M; Veazey R; Bar K; Keele B; Davenport M; Paiardini M; Betts M, 2022, 'Enforced lymphoid tissue retention of CD8(+) T cells in SIV-infected Rhesus Macaques does not induce control of SIV plasma viremia', in JOURNAL OF MEDICAL PRIMATOLOGY, WILEY, Vol. 51, pp. 318 - 318, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000852720100064&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Viox E; Samer S; Nguyen K; Docken S; Lindemuth E; Mampe F; Pinkevych M; Keele B; Betts M; Davenport M; Paiardini M; Bar K, 2022, 'Impact of CD4 binding-site bNAb therapy on viral rebound in barcoded TF-SHIV-D-infected rhesus macaques at ATI', in JOURNAL OF MEDICAL PRIMATOLOGY, WILEY, Vol. 51, pp. 301 - 302, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000852720100028&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Lansink LIM; Engel JA; Lee HJ; Soon MSF; Williams CG; Aogo RA; Cromer D; Davenport MP; Khoury DS; Haque A, 2021, 'Exposure to host inflammation in vivo induces rapid transcriptomic change and impaired maturation in malaria parasites', in JOURNAL OF IMMUNOLOGY, AMER ASSOC IMMUNOLOGISTS, Vol. 206, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000713665801305&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Tabilas C; Reynaldi A; Daly CWP; Mon KY; Wesnak S; Smith NL; Davenport MP; Grimson AW; Rudd BD, 2021, 'Microbial exposure in early life alters the ontogeny and function of CD8+T cells', in JOURNAL OF IMMUNOLOGY, AMER ASSOC IMMUNOLOGISTS, Vol. 206, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000713665801448&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Okoye AA; Duell DM; Marenco A; Lidell M; Behrens H; Selseth A; Varco-Merth B; Hesselgesser J; Geleziunas R; Smedley J; Park H; Axthelm MK; Davenport M; Hansen SG; Deeks SG; Keele B; Lifson JD; Picker LJ, 2020, 'CD8+T cells provide limited control of SIV reactivation after combination antiretroviral therapy (cART) cessation', in JOURNAL OF MEDICAL PRIMATOLOGY, WILEY, Vol. 49, pp. 238 - 239, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000571653100042&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Pino M; King C; Shim I; Wang H; Nguyen K; Samer S; Harper J; Lifson J; Reynaldi A; Deleage C; Padhan K; Cervasi B; Davenport MP; Petrovas C; Lederman MM; Paiardini M, 2019, 'Fingolimod treatment at ART initiation delays SIV rebound after ART interruption', in JOURNAL OF THE INTERNATIONAL AIDS SOCIETY, JOHN WILEY & SONS LTD, Vol. 22, pp. 43 - 43, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000476890500090&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Fennessey C; Pinkevych M; Immonen T; Camus C; Del Prete G; Estes J; Lifson J; Davenport M; Keele B, 2017, 'Assessing individual viral reactivations of the latent reservoir using a novel barcoded virus', in JOURNAL OF THE INTERNATIONAL AIDS SOCIETY, JOHN WILEY & SONS LTD, Vol. 20, pp. 1 - 1, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000406429800002&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Pinkevych M; Reynaldi A; Fennessey C; Reid C; Nadella P; Lipkey L; Newman L; Ayala V; Jain S; Del Prete G; Estes J; Ott D; Lifson J; Ohlen C; Keele B; Davenport M, 2016, 'Frequent and "burst-like'' reactivation from latency in SIVmac239M infected macaques', in JOURNAL OF THE INTERNATIONAL AIDS SOCIETY, JOHN WILEY & SONS LTD, Vol. 19, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000395394300134&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Working Papers

Goel RR; Painter MM; Lundgreen KA; Apostolidis SA; Baxter AE; Giles JR; Mathew D; Pattekar A; Reynaldi A; Khoury DS; Gouma S; Hicks P; Dysinger S; Hicks A; Sharma H; Herring S; Korte S; Kc W; Oldridge DA; Erickson RI; Weirick ME; McAllister CM; Awofolaju M; Tanenbaum N; Dougherty J; Long S; D'Andrea K; Hamilton JT; McLaughlin M; Williams JC; Adamski S; Kuthuru O; Drapeau EM; Davenport MP; Hensley SE; Bates P; Greenplate AR; Wherry EJ, 2022, Efficient recall of Omicron-reactive B cell memory after a third dose of SARS-CoV-2 mRNA vaccine., http://dx.doi.org10.1101/2022.02.20.481163, https://www.ncbi.nlm.nih.gov/pubmed/35233575

Cele S; Jackson L; Khoury DS; Khan K; Moyo-Gwete T; Tegally H; San JE; Cromer D; Scheepers C; Amoako D; Karim F; Bernstein M; Lustig G; Archary D; Smith M; Ganga Y; Jule Z; Reedoy K; Hwa S-H; Giandhari J; Blackburn JM; Gosnell BI; Abdool Karim SS; Hanekom W; NGS-SA ; COMMIT-KZN Team ; von Gottberg A; Bhiman J; Lessells RJ; Moosa M-YS; Davenport MP; de Oliveira T; Moore PL; Sigal A, 2021, SARS-CoV-2 Omicron has extensive but incomplete escape of Pfizer BNT162b2 elicited neutralization and requires ACE2 for infection., http://dx.doi.org10.1101/2021.12.08.21267417, https://www.ncbi.nlm.nih.gov/pubmed/34909788

Charon J; Grigg M; Eden J-S; Piera K; William T; Rose K; Davenport M; Anstey N; Holmes E, 2019, Matryoshka RNA virus 1: a novel RNA virus associated with Plasmodium parasites in human malaria, http://dx.doi.org10.1101/624403

Preprints

Docken SS; Macairan A; Schlub TE; Fennessey CM; Varco-Merth B; Picker LJ; Okoye AA; Immonen TT; Cromer D; Keele BF; Davenport MP, 2025, Dissecting the steps in early Simian Immunodeficiency Virus dissemination following mucosal and intravenous infection of rhesus macaques, http://dx.doi.org/10.1101/2025.03.24.644849

Pampena MB; Samer S; Viox EG; Nguyen K; Deleage C; Kuri-Cervantes L; Regan J; Wu VH; Docken S; Safrit JT; Bar KJ; Keele BF; Davenport MP; Paiardini M; Betts MR, 2025, Therapeutic CD8+T cell tissue retention and immunomodulation during ART interruption fails to prevent SIV rebound, http://dx.doi.org/10.1101/2025.03.17.643755

Tabilas C; Venturi V; Kean C; Minervina A; Thomas PG; Grimson A; Grenier JK; Davenport MP; Smith NL; Rudd BD, 2025, Single-cell multiomics reveals the distinct properties of neonatal and adult recent thymic emigrants, http://dx.doi.org/10.1101/2025.02.26.640106

Hilt ZT; Reynaldi A; Steinhilber M; Zhang S; Wesnak SP; Smith NL; Davenport MP; Rudd BD, 2025, Recent thymic emigrants are preferentially recruited into the memory pool during persistent infection., http://dx.doi.org/10.1101/2025.02.06.636722

Abayasingam A; Gupta M; Wu B-R; Underwood AP; Young C; Rodrigo C; Walker MR; Agapiou D; Eltahla AA; Li H; Keoshkerian E; Su S; Brasher NA; Reynaldi A; Burnett D; Davenport M; Luciani F; Tedla N; Maher L; Lloyd AR; Bull RA, 2024, Affinity of the Transmitted Founder Virus Drives Early Emergence of Hepatitis C Virus Specific Neutralising Antibodies, http://dx.doi.org/10.2139/ssrn.4935049

Kent S; Li S; Amarasena T; Reynaldi A; Lee WS; Leeming M; O’Connor D; Nguyen J; Kent H; Caruso F; Juno J; Wheatley A; Davenport M; Ju Y, 2024, Blood Distribution of SARS-CoV-2 Lipid Nanoparticle mRNA Vaccine in Humans, http://dx.doi.org/10.1101/2024.07.25.24311039

Berry M; MacIntyre R; Cromer D; Hacker A; Davenport M; Khoury D, 2024, Optimal deployment of limited vaccine supplies to combat mpox, http://dx.doi.org/10.1101/2024.11.03.24316551

Conway E; Walker C; Lydeamore M; Golding N; Ryan G; Mavec D; Oates J; Kabashima G; Price D; Shearer F; Cromer D; Davenport M; McCaw J; Eriksson E; Hodgkin P; Wu L; Le T; Baker C; Mueller I; McVernon J, 2024, Optimal timing of booster doses in a highly vaccinated population with minimal natural exposure to COVID-19, http://dx.doi.org/10.1101/2024.05.14.24307386

Ashley C; Bloul M; Alca S; Smith L; Jin W; Khoury D; Counoupas C; Davenport M; Triccas J; Steain M, 2024, Optimisation of a multiplexed, high throughput assay to measure neutralising antibodies against SARS-CoV-2 variants, http://dx.doi.org/10.1101/2024.09.01.610733

Cromer D; Reynaldi A; Hie A; Schlub T; Juno J; Wheatley A; Kent S; Khoury D; Davenport M, 2024, Predicting COVID-19 booster immunogenicity against future SARS-CoV-2 variants and the benefits of vaccine updates, http://dx.doi.org/10.1101/2024.02.08.24302032

Lee WS; Tan H-X; Reynaldi A; Esterbauer R; Koutsakos M; Nguyen J; Amarasena T; Kent H; Aggarwal A; Turville S; Taiaroa G; Kinsella P; Liew KC; Tran T; Williamson D; Cromer D; Davenport M; Kent S; Juno J; Khoury D; Wheatley A, 2023, Durable reprogramming of neutralising antibody responses following breakthrough Omicron infection, http://dx.doi.org/10.1101/2023.02.19.23286159

Selva KJ; Ramanathan P; Haycroft ER; Reynaldi A; Cromer D; Tan CW; Wang L-F; Wines B; Hogarth M; Downie L; Davis S; Purcell RA; Kent H; Juno J; Wheatley A; Davenport M; Kent SJ; Chung A, 2023, Lasting first impression: Pre-existing immunity restricts mucosal antibody responses during Omicron breakthrough, http://dx.doi.org/10.1101/2023.03.28.23287848

Wagstaffe H; Thwaites R; Reynaldi A; Sidhu J; McKendry R; Ascough S; Papargyris L; Collins A; Xu J; Lemm N-M; Siggins M; Chain B; Killingley B; Kalinova M; Mann A; Catchpole A; Davenport M; Openshaw PJM; Chiu C, 2023, Mucosal and Systemic Immune Correlates of Viral Control following SARS-CoV-2 Infection Challenge in Seronegative Adults, http://dx.doi.org/10.1101/2023.07.21.23292994

Berry M; Khan S; Schlub T; Notaras A; Kunasekaran M; Grulich A; MacIntyre R; Davenport M; Khoury D, 2023, Predicting vaccine effectiveness in Mpox, http://dx.doi.org/10.1101/2023.11.23.23298850

Elias K; Khan S; Stadler E; Schlub T; Cromer D; Polizzotto M; Kent S; Turner T; Davenport M; Khoury D, 2023, Viral clearance as a surrogate of clinical efficacy for COVID-19 therapies in outpatients: A systematic review and meta-analysis, http://dx.doi.org/10.1101/2023.06.18.23291566

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