By Professor Miles Davenport

Journal articles

Hill BJ; Darrah PA; Ende Z; Ambrozak DR; Quinn KM; Darko S; Gostick E; Wooldridge L; Van Den Berg HA; Venturi V; Larsen M; Davenport MP; Seder RA; Price DA; Douek DC, 2014, 'Epitope specificity delimits the functional capabilities of vaccine-induced CD8 T cell populations', Journal of Immunology, 193, pp. 5626 - 5636, http://dx.doi.org/10.4049/jimmunol.1401017

Micci L; Alvarez X; Iriele RI; Ortiz AM; Ryan ES; McGary CS; Deleage C; McAtee BB; He T; Apetrei C; Easley K; Pahwa S; Collman RG; Derdeyn CA; Davenport MP; Estes JD; Silvestri G; Lackner AA; Paiardini M, 2014, 'CD4 Depletion in SIV-Infected Macaques Results in Macrophage and Microglia Infection with Rapid Turnover of Infected Cells', Plos Pathogens, 10, pp. e1004467, http://dx.doi.org/10.1371/journal.ppat.1004467

Micci L; Iriele R; Alvarez X; Ortiz A; Midkiff C; McGary C; Davenport M; Estes J; Lackner A; Silvestri G; Paiardini M, 2014, 'EXPERIMENTAL CD4 DEPLETION PRIOR TO SIV INFECTION IN MACAQUES RESULTS IN ENCEPHALITIS, MASSIVE MACROPHAGES AND MICROGLIA INFECTION, AND RAPID TURNOVER OF INFECTED CELLS', JOURNAL OF MEDICAL PRIMATOLOGY, 43, pp. 380 - 380, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000342673700017&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Smith NL; Wissink E; Wang J; Pinello JF; Davenport MP; Grimson A; Rudd BD, 2014, 'Rapid proliferation and differentiation impairs the development of memory CD8+ T cells in early life', Journal of Immunology, 193, pp. 177 - 184, http://dx.doi.org/10.4049/jimmunol.1400553

Davenport M, 2014, 'A spectrum of (avoidable) HIV latency?', MICROBIOLOGY AUSTRALIA, 35, pp. 95 - 96, http://dx.doi.org/10.1071/MA14029

Reece JC; Martyushev A; Petravic J; Grimm A; Gooneratne S; Amaresena T; De Rose R; Loh L; Davenport MP; Kent SJ, 2014, 'Measuring turnover of SIV DNA in resting CD4+ T cells using pyrosequencing: Implications for the timing of HIV eradication therapies', Plos One, 9, pp. e93330, http://dx.doi.org/10.1371/journal.pone.0093330

Schlub TE; Grimm AJ; Smyth RP; Cromer D; Chopra A; Mallal S; Venturi V; Waugh C; Mak J; Davenport MP, 2014, 'Fifteen to twenty percent of HIV substitution mutations are associated with recombination', Journal of Virology, 88, pp. 3837 - 3849, http://dx.doi.org/10.1128/JVI.03136-13

Smyth RP; Schlub TE; Grimm AJ; Waugh C; Ellenberg P; Chopra A; Mallal S; Cromer D; Mak J; Davenport MP, 2014, 'Identifying Recombination Hot Spots in the HIV-1 Genome', Journal of Virology, 88, pp. 2891 - 2902, http://dx.doi.org/10.1128/JVI.03014-13

Ebrahimi D; Alinejad-Rokny H; Davenport MP; Ebrahimi Mohammadi D, 2014, 'Insights into the motif preference of APOBEC3 enzymes', Plos One, 9, pp. e87679, http://dx.doi.org/10.1371/journal.pone.0087679

Fergusson JR; Smith KE; Fleming VM; Rajoriya N; Newell EW; Simmons R; Marchi E; Björkander S; Kang YH; Swadling L; Kurioka A; Sahgal N; Lockstone H; Baban D; Freeman GJ; Sverremark-Ekström E; Davis MM; Davenport MP; Venturi V; Ussher JE; Willberg CB; Klenerman P, 2014, 'CD161 defines a transcriptional and functional phenotype across distinct human T cell lineages', Cell Reports, 9, pp. 1075 - 1088, http://dx.doi.org/10.1016/j.celrep.2014.09.045

Jiang W; Souheil-Antoine Y; Funderburg NT; Mudd JC; Espinosa E; Davenport MP; Babineau DC; Sieg SF; Lederman MM, 2014, 'Cycling memory CD4+ T cells in HIV disease have a diverse T cell receptor repertoire and a phenotype consistent with bystander activation', Journal of Virology, 88, pp. 5369 - 5380, http://dx.doi.org/10.1128/JVI.00017-14

Pinkevych M; Petravic J; Chelimo K; Vulule J; Kazura JW; Moormann AM; Davenport MP, 2014, 'Decreased growth rate of P. falciparum blood stage parasitemia with age in a holoendemic population', Journal of Infectious Diseases, 209, pp. 1136 - 1143, http://dx.doi.org/10.1093/infdis/jit613

McGary CS; Cervasi B; Chahroudi A; Micci L; Taaffe J; Meeker T; Silvestri G; Davenport MP; Paiardini M, 2014, 'Increased stability and limited proliferation of CD4+ central memory T cells differentiate nonprogressive simian immunodeficiency virus (SIV) infection of sooty mangabeys from progressive SIV infection of rhesus macaques', Journal of Virology, 88, pp. 4533 - 4542, http://dx.doi.org/10.1128/JVI.03515-13

Petravic J; Ellenberg P; Chan ML; Paukovics G; Smyth RP; Mak J; Davenport MP, 2014, 'Intracellular dynamics of HIV infection', Journal of Virology, 88, pp. 1113 - 1124, http://dx.doi.org/10.1128/JVI.02038-13

Gooneratne SL; Alinejad-Rokny H; Ebrahimi D; Bohn PS; Wiseman RW; O'Connor DH; Davenport MP; Kent SJ, 2014, 'Linking pig-tailed macaque major histocompatibility complex class I haplotypes and cytotoxic T lymphocyte escape mutations in simian immunodeficiency virus infection', Journal of Virology, 88, pp. 14310 - 14325, http://dx.doi.org/10.1128/JVI.02428-14

Petravic J; Martyushev A; Reece JC; Kent SJ; Davenport MP, 2014, 'Modeling the timing of antilatency drug administration during HIV treatment', Journal of Virology, 88, pp. 14050 - 14056, http://dx.doi.org/10.1128/JVI.01701-14

Kent SJ; Davenport MP, 2014, 'Tentative first steps to eradicate latent HIV', Lancet HIV, 1, pp. e2 - e3, http://dx.doi.org/10.1016/S2352-3018(14)70015-3

Pastori C; Diomede L; Venuti A; Fisher G; Jarvik J; Bomsel M; Sanvito F; Lopalco L, 2014, 'Induction of HIV-blocking anti-CCR5 IgA in Peyers's patches without histopathological alterations.', J Virol, 88, pp. 3623 - 3635, http://dx.doi.org/10.1128/JVI.03663-13

Jegaskanda S; Amarasena TH; Laurie KL; Tan HX; Butler J; Parsons MS; Alcantara S; Petravic J; Davenport MP; Hurt AC; Reading PC; Kent SJ, 2013, 'Standard trivalent influenza virus protein vaccination does not prime antibody-dependent cellular cytotoxicity in macaques', Journal of Virology, 87, pp. 13706 - 13718, http://dx.doi.org/10.1128/JVI.01666-13

Pinkevych M; Petravic J; Chelimo K; Vulule J; Kazura JW; Moormann AM; Davenport MP, 2013, 'Density-dependent blood stage Plasmodium falciparum suppresses malaria super-infection in a malaria holoendemic population', American Journal of Tropical Medicine and Hygiene, 89, pp. 850 - 856, http://dx.doi.org/10.4269/ajtmh.13-0049

Khoury DS; Cromer D; Best SE; James KR; Kim PS; Engwerda CR; Haque A; Davenport MP, 2013, 'Effect of mature, blood-stage Plasmodium parasite sequestration on pathogen biomass in mathematical and in vivo models of malaria.', Infection and Immunity, 82, pp. 212 - 220, http://dx.doi.org/10.1128/IAI.00705-13

Petravic J; Vanderford TH; Silvestri G; Davenport M, 2013, 'Estimating the contribution of the gut to plasma viral load in early SIV infection', Retrovirology, 10, pp. 105, http://dx.doi.org/10.1186/1742-4690-10-105

Tey SK; Kennedy GA; Cromer D; Davenport MP; Walker S; Jones LI; Crough T; Durrant ST; Morton JA; Butler JP; Misra AK; Hill GR; Khanna R, 2013, 'Clinical Assessment of Anti-Viral CD8+ T Cell Immune Monitoring Using QuantiFERON-CMV® Assay to Identify High Risk Allogeneic Hematopoietic Stem Cell Transplant Patients with CMV Infection Complications', Plos One, 8, pp. e74744, http://dx.doi.org/10.1371/journal.pone.0074744

Davenport MP; Dunn-Walters DK, 2013, 'Immunogenetics and transplantation', Current Opinion in Immunology, 25, pp. 606 - 607, http://dx.doi.org/10.1016/j.coi.2013.09.001

Venturi V; Rudd BD; Davenport MP, 2013, 'Specificity, promiscuity, and precursor frequency in immunoreceptors', Current Opinion in Immunology, 25, pp. 639 - 645, http://dx.doi.org/10.1016/j.coi.2013.07.001

Davenport MP; Dunn-Walters DK, 2013, 'Immunogenetics and transplantation', Current Opinion in Immunology, http://dx.doi.org/10.1016/j.coi.2013.09.001

Reece J; Petravic J; Balamurali M; Loh L; Gooneratne S; De Rose R; Kent SJ; Davenport MP, 2013, 'Correction: An “Escape Clock” for Estimating the Turnover of SIV DNA in Resting CD4+ T Cells', PLoS Pathogens, 9, http://dx.doi.org/10.1371/annotation/7556ed6f-2d66-48a9-be38-4aefe4400393

Rudd BD; Venturi V; Smith NL; Nzingha K; Goldberg EL; Li G; Nikolich-Zugich J; Davenport MP, 2013, 'Acute Neonatal Infections 'Lock-In' a Suboptimal CD8+ T Cell Repertoire with Impaired Recall Responses', Plos Pathogens, 9, pp. e1003572, http://dx.doi.org/10.1371/journal.ppat.1003572

Venturi V; Rudd BD; Davenport MP, 2013, 'Specificity, promiscuity, and precursor frequency in immunoreceptors', Current Opinion in Immunology, http://dx.doi.org/10.1016/j.coi.2013.07.001

Kent SJ; Reece JC; Petravic J; Martyushev A; Kramski M; De Rose R; Cooper DA; Kelleher AD; Emery S; Cameron PU; Lewin SR; Davenport MP, 2013, 'The search for an HIV cure: Tackling latent infection', Lancet Infectious Diseases, 13, pp. 614 - 621, http://dx.doi.org/10.1016/S1473-3099(13)70043-4

Reece JC; Alcantara S; Gooneratne S; Jegaskanda S; Amaresena T; Fernandez CS; Laurie K; Hurt A; O'Connor SL; Harris M; Petravic J; Martyushev A; Grimm A; Davenport MP; Stambas J; De Rose R; Kent SJ, 2013, 'Trivalent live attenuated influenza-simian immunodeficiency virus vaccines: Efficacy and evolution of cytotoxic T lymphocyte escape in macaques', Journal of Virology, 87, pp. 4146 - 4160, http://dx.doi.org/10.1128/JVI.02645-12

Anwar F; Davenport MP; Ebrahimi Mohammadi D, 2013, 'Footprint of APOBEC3 on the genome of human retroelements', Journal of Virology, 87, pp. 8195 - 8204

Greenaway HY; Ng B; Price D; Douek DC; Davenport MP; Venturi V, 2013, 'NKT and MAIT invariant TCRalpha sequences can be produced efficiently by VJ gene recombination', Immunobiology, 218, pp. 213 - 224, http://dx.doi.org/10.1016/j.imbio.2012.04.003

Plotkin SA; Robinson HL; Davenport MP, 2012, 'Mining the mechanisms of an HIV vaccine.', Nature medicine, 18, pp. 1020 - 1021

Valkenburg SA; Venturi V; Dang THY; Bird NL; Doherty PC; Turner SJ; Davenport MP; Kedzierska K, 2012, 'Correction: Early Priming Minimizes the Age-Related Immune Compromise of CD8⁺T Cell Diversity and Function', PLoS Pathogens, 8, http://dx.doi.org/10.1371/annotation/e142f9de-7f30-4759-bda1-a651e86d5ba6

Reece J; Petravic J; Balamurali M; Loh L; De Rose R; Kent SJ; Davenport MP, 2012, 'An “Escape clock” for estimating the turnover of SIV DNA in resting CD4+ T cells', PLoS Pathogens, 8, pp. e1002615, http://dx.doi.org/10.1371/journal.ppat.1002615

Ebrahimi Mohammadi D; Anwar F; Davenport MP, 2012, 'APOBEC3G and APOBEC3F rarely co-mutate the same HIV genome', Retrovirology, 9, pp. 113, http://dx.doi.org/10.1186/1742-4690-9-113

Venturi V; Davenport MP; Doherty PC; Kedzierska K, 2012, 'Consequences of suboptimal priming are apparent for low-avidity T-cell responses', Immunology and Cell Biology, 90, pp. 216 - 223, http://dx.doi.org/10.1038/icb.2011.36

Valkenburg SA; Venturi V; Dang THY; Bird NL; Doherty PC; Turner SJ; Davenport MP; Kedzierska K, 2012, 'Early priming minimizes the age-related immune compromise of CD8 + T cell diversity and function', PLoS Pathogens, 8, pp. Article number e1002544, http://dx.doi.org/10.1371/journal.ppat.1002544

Smithey MJ; Li G; Venturi V; Davenport MP; Nikolich-Zugich J, 2012, 'Lifelong persistent viral infection alters the naive T cell pool, impairing CD8 T cell immunity in late life', Journal of Immunology, 189, pp. 5356 - 5366, http://dx.doi.org/10.4049/jimmunol.1201867

Davenport MP, 2012, 'Mining the mechanisms of an HIV vaccine', Nature Medicine, 18, pp. 1020 - 1021, http://dx.doi.org/10.1038/nm.2858

Pinkevych M; Petravic J; Chelimo K; Kazura J; Moormann A; Davenport MP, 2012, 'The Dynamics of Naturally Acquired Immunity to Plasmodium falciparum Infection', PLoS Computational Biology, 8, pp. Article number e1002729, http://dx.doi.org/10.1371/journal.pcbi.1002729

Smyth R; Davenport MP; Mak J, 2012, 'The origins of genetic diversity in HIV-1', Virus Research, 169, pp. 415 - 429, http://dx.doi.org/10.1016/j.virusres.2012.06.015

Kedzierska K; Valkenburg S; Doherty PC; Davenport MP; Venturi V, 2012, 'Use it or lose it: establishment and persistence of T cell memory', Frontiers in Immunology, 3, pp. 1 - 11, http://dx.doi.org/10.3389/fimmu.2012.00357

Schlub TE; Sun JC; Walton SM; Robbins SH; Pinto AK; Munks MW; Hill AB; Brossay L; Oxenius A; Davenport MP, 2011, 'Comparing the kinetics of NK cells, CD4, and CD8 T cells in murine cytomegalovirus infection', Journal of Immunology, 187, pp. 1385 - 1392, http://dx.doi.org/10.4049/jimmunol.1100416

Davenport MP; Ebrahimi Mohammadi D; Anwar F, 2011, 'APOBEC3 Has Not Left an Evolutionary Footprint on the HIV-1 Genome', Journal of Virology, 85, pp. 9139 - 9146, http://jvi.asm.org/content/85/17/9139.full?sid=ca96d928-5132-4714-b693-bde43f5124ed

Davenport MP; Schlub T; Sun JC; Walton SM; Robbins SH; Pinto AK; Munks MW; Brossay L; Hill AB; Oxenius A, 2011, 'Comparing the Kinetics of NK Cells, CD4, and CD8 T Cells in Murine Cytomegalovirus Infection', Journal of Immunology, 187, pp. 1385 - 1392, http://dx.doi.org/10.4049/jimmunol.1190037

Paiardini M; Cervasi B; Reyes-Aviles E; Micci L; Ortiz AM; Chahroudi AM; Vinton C; Gordon SN; Bosinger SE; Francella N; Hallberg PL; Schlub T; Chan ML; Riddick NE; Collman RG; Apetrei C; Pandrea I; Else JG; Munch J; Kirchhoff F; Davenport MP; Brenchley JM; Silvestri G; Cramer EM, 2011, 'Low levels of SIV infection in sooty mangabey central memory CD4 + T cells are associated with limited CCR5 expression', Nature Medicine, 17, pp. 830 - 836, http://dx.doi.org/10.1038/nm.2395

Rudd BD; Venturi V; Li G; Samadder P; Ertelt JM; Way SS; Davenport MP; Nikolich-Zugich J, 2011, 'Nonrandom attrition of the naive CD8+ T-cell pool with aging governed by T-cell receptor: pMHC interactions', Proceedings of the National Academy of Sciences of the United States of America, 108, pp. 13694 - 13699, http://dx.doi.org/10.1073/pnas.1107594108

Petravic J; Davenport MP, 2011, 'Simian-human immunodeficiency infection - is the course set in the acute phase?', PLoS One, 6, pp. e17180 - e17189, http://dx.doi.org/10.1371/journal.pone.0017180

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