By Professor Marcel Dinger

Book Chapters

Zeraati M; Dinger ME; Christ D, 2018, 'Selection of antibody fragments against structured DNA by phage display', in Methods in Molecular Biology, pp. 197 - 209, http://dx.doi.org/10.1007/978-1-4939-8648-4_11

Journal articles

Mondal S; Liu PY; Seneviratne J; De Weck A; Venkat P; Mayoh C; Wu J; Maag J; Chen J; Wong M; Bartonicek N; Khoo P; Jin L; Ludlow LE; Ziegler DS; Trahair T; Mestdagh P; Cheung BB; Li J; Dinger ME; Street I; Zhang XD; Marshall GM; Liu T, 2025, 'The Super Enhancer-Driven Long Noncoding RNA PRKCQ-AS1 Promotes Neuroblastoma Tumorigenesis by Interacting With MSI2 Protein and Is Targetable by Small Molecule Compounds', Advanced Science, 12, pp. 2412520, http://dx.doi.org/10.1002/advs.202412520

Mondal S; Liu PY; Seneviratne J; De Weck A; Venkat P; Mayoh C; Wu J; Maag J; Chen J; Wong M; Bartonicek N; Khoo P; Jin L; Ludlow LE; Ziegler DS; Trahair T; Mestdagh P; Cheung BB; Li J; Dinger ME; Street I; Zhang XD; Marshall GM; Liu T, 2025, 'Abstract 2608: The super enhancer-driven long noncoding RNA lncNB promotes neuroblastoma tumorigenesis by interacting with MSI2 protein and is targetable by small molecule compounds', Cancer Research, 85, pp. 2608 - 2608, http://dx.doi.org/10.1158/1538-7445.am2025-2608

Su Z; Fang M; Smolnikov A; Vafaee F; Dinger ME; Oates EC, 2025, 'Post-transcriptional regulation supports the homeostatic expression of mature RNA', Briefings in Bioinformatics, 26, http://dx.doi.org/10.1093/bib/bbaf027

Peña Martinez CD; Zeraati M; Rouet R; Mazigi O; Henry JY; Gloss B; Kretzmann JA; Evans CW; Ruggiero E; Zanin I; Marušič M; Plavec J; Richter SN; Bryan TM; Smith NM; Dinger ME; Kummerfeld S; Christ D, 2024, 'Human genomic DNA is widely interspersed with i-motif structures', EMBO Journal, 43, pp. 4786 - 4804, http://dx.doi.org/10.1038/s44318-024-00210-5

Ross SE; Holliday H; Tsoli M; Ziegler DS; Dinger ME, 2024, 'Abstract B015: RNA N6-methyladenosine (m6A) as a therapeutic target in Diffuse Midline Glioma (DMG)', Cancer Research, 84, pp. B015 - B015, http://dx.doi.org/10.1158/1538-7445.brain23-b015

Hussen BM; Shoorei H; Mohaqiq M; Dinger ME; Hidayat HJ; Taheri M; Ghafouri-Fard S, 2024, 'Corrigendum: The impact of non-coding RNAs in the epithelial to mesenchymal transition (Frontiers in Molecular Biosciences, (2021), 8, (665199), 10.3389/fmolb.2021.665199)', Frontiers in Molecular Biosciences, 11, http://dx.doi.org/10.3389/fmolb.2024.1524742

Zeraati M; Ross SE; Aghaei B; Rajal AG; King C; Dinger ME, 2023, 'Protocol for the production and purification of an i-Motif-specific nanobody', STAR Protocols, 4, http://dx.doi.org/10.1016/j.xpro.2023.102729

Sullivan PJ; Gayevskiy V; Davis RL; Wong M; Mayoh C; Mallawaarachchi A; Hort Y; McCabe MJ; Beecroft S; Jackson MR; Arts P; Dubowsky A; Laing N; Dinger ME; Scott HS; Oates E; Pinese M; Cowley MJ, 2023, 'Introme accurately predicts the impact of coding and noncoding variants on gene splicing, with clinical applications', Genome Biology, 24, http://dx.doi.org/10.1186/s13059-023-02936-7

Groza T; Wu H; Dinger ME; Danis D; Hilton C; Bagley A; Davids JR; Luo L; Lu Z; Robinson PN, 2023, 'Term-BLAST-like alignment tool for concept recognition in noisy clinical texts', Bioinformatics, 39, http://dx.doi.org/10.1093/bioinformatics/btad716

Ross SE; Vázquez-Marín J; Gert KRB; González-Rajal Á; Dinger ME; Pauli A; Martínez-Morales JR; Bogdanovic O, 2023, 'Evolutionary conservation of embryonic DNA methylome remodelling in distantly related teleost species', Nucleic Acids Research, 51, pp. 9658 - 9671, http://dx.doi.org/10.1093/nar/gkad695

Mattick JS; Amaral PP; Carninci P; Carpenter S; Chang HY; Chen LL; Chen R; Dean C; Dinger ME; Fitzgerald KA; Gingeras TR; Guttman M; Hirose T; Huarte M; Johnson R; Kanduri C; Kapranov P; Lawrence JB; Lee JT; Mendell JT; Mercer TR; Moore KJ; Nakagawa S; Rinn JL; Spector DL; Ulitsky I; Wan Y; Wilusz JE; Wu M, 2023, 'Long non-coding RNAs: definitions, functions, challenges and recommendations', Nature Reviews Molecular Cell Biology, 24, pp. 430 - 447, http://dx.doi.org/10.1038/s41580-022-00566-8

Stark Z; Boughtwood T; Haas M; Braithwaite J; Gaff CL; Goranitis I; Spurdle AB; Hansen DP; Hofmann O; Laing N; Metcalfe S; Newson AJ; Scott HS; Thorne N; Ward RL; Dinger ME; Best S; Long JC; Grimmond SM; Pearson J; Waddell N; Barnett CP; Cook M; Field M; Fielding D; Fox SB; Gecz J; Jaffe A; Leventer RJ; Lockhart PJ; Lunke S; Mallett AJ; McGaughran J; Mileshkin L; Nones K; Roscioli T; Scheffer IE; Semsarian C; Simons C; Thomas DM; Thorburn DR; Tothill R; White D; Dunwoodie S; Simpson PT; Phillips P; Brion MJ; Finlay K; Quinn MC; Mattiske T; Tudini E; Boggs K; Murray S; Wells K; Cannings J; Sinclair AH; Christodoulou J; North KN, 2023, 'Australian Genomics: Outcomes of a 5-year national program to accelerate the integration of genomics in healthcare', American Journal of Human Genetics, 110, pp. 419 - 426, http://dx.doi.org/10.1016/j.ajhg.2023.01.018

Ghafouri-Fard S; Abak A; Baniahmad A; Hussen BM; Taheri M; Jamali E; Dinger ME, 2022, 'Interaction between non-coding RNAs, mRNAs and G-quadruplexes', Cancer Cell International, 22, http://dx.doi.org/10.1186/s12935-022-02601-2

Tudini E; Andrews J; Lawrence DM; King-Smith SL; Baker N; Baxter L; Beilby J; Bennetts B; Beshay V; Black M; Boughtwood TF; Brion K; Cheong PL; Christie M; Christodoulou J; Chong B; Cox K; Davis MR; Dejong L; Dinger ME; Doig KD; Douglas E; Dubowsky A; Ellul M; Fellowes A; Fisk K; Fortuno C; Friend K; Gallagher RL; Gao S; Hackett E; Hadler J; Hipwell M; Ho G; Hollway G; Hooper AJ; Kassahn KS; Krishnaraj R; Lau C; Le H; San Leong H; Lundie B; Lunke S; Marty A; McPhillips M; Nguyen LT; Nones K; Palmer K; Pearson JV; Quinn MCJ; Rawlings LH; Sadedin S; Sanchez L; Schreiber AW; Sigalas E; Simsek A; Soubrier J; Stark Z; Thompson BA; U J; Vakulin CG; Wells AV; Wise CA; Woods R; Ziolkowski A; Brion MJ; Scott HS; Thorne NP; Spurdle AB, 2022, 'Shariant platform: Enabling evidence sharing across Australian clinical genetic-testing laboratories to support variant interpretation', American Journal of Human Genetics, 109, pp. 1960 - 1973, http://dx.doi.org/10.1016/j.ajhg.2022.10.006

Ewans LJ; Minoche AE; Schofield D; Shrestha R; Puttick C; Zhu Y; Drew A; Gayevskiy V; Elakis G; Walsh C; Adès LC; Colley A; Ellaway C; Evans CA; Freckmann ML; Goodwin L; Hackett A; Kamien B; Kirk EP; Lipke M; Mowat D; Palmer E; Rajagopalan S; Ronan A; Sachdev R; Stevenson W; Turner A; Wilson M; Worgan L; Morel-Kopp MC; Field M; Buckley MF; Cowley MJ; Dinger ME; Roscioli T, 2022, 'Whole exome and genome sequencing in mendelian disorders: a diagnostic and health economic analysis', European Journal of Human Genetics, 30, pp. 1121 - 1131, http://dx.doi.org/10.1038/s41431-022-01162-2

Bartonicek N; Rouet R; Warren J; Loetsch C; Rodriguez GS; Walters S; Lin F; Zahra D; Blackburn J; Hammond JM; Reis ALM; Deveson IW; Zammit N; Zeraati M; Grey S; Christ D; Mattick JS; Chtanova T; Brink R; Dinger ME; Weatheritt RJ; Sprent J; King C, 2022, 'The retroelement Lx9 puts a brake on the immune response to virus infection', Nature, 608, pp. 757 - 765, http://dx.doi.org/10.1038/s41586-022-05054-9

Davis RL; Kumar KR; Puttick C; Liang C; Ahmad KE; Edema-Hildebrand F; Park JS; Minoche AE; Gayevskiy V; Mallawaarachchi AC; Christodoulou J; Schofield D; Dinger ME; Cowley MJ; Sue CM, 2022, 'Use of Whole-Genome Sequencing for Mitochondrial Disease Diagnosis', Neurology, 99, pp. E730 - E742, http://dx.doi.org/10.1212/WNL.0000000000200745

Nash BM; Ma A; Ho G; Farnsworth E; Minoche AE; Cowley MJ; Barnett C; Smith JM; Loi TH; Wong K; Heaps LS; Wright D; Dinger ME; Bennetts B; Grigg JR; Jamieson RV, 2022, 'Whole Genome Sequencing, Focused Assays and Functional Studies Increasing Understanding in Cryptic Inherited Retinal Dystrophies', International Journal of Molecular Sciences, 23, http://dx.doi.org/10.3390/ijms23073905

Ghafouri-Fard S; Hussen BM; Pashmforoush S; Akbari MT; Arsang-Jang S; Nazer N; Hamidieh AA; Hajifathali A; Dinger ME; Sayad A; Dehaghi MO, 2022, 'HLA alleles and haplotype frequencies in Iranian population', Human Antibodies, 30, pp. 79 - 96, http://dx.doi.org/10.3233/HAB-220004

Taheri M; Mahmud Hussen B; Tondro Anamag F; Shoorei H; Dinger ME; Ghafouri-Fard S, 2022, 'The role of miRNAs and lncRNAs in conferring resistance to doxorubicin', Journal of Drug Targeting, 30, pp. 1 - 21, http://dx.doi.org/10.1080/1061186X.2021.1909052

Minoche AE; Lundie B; Peters GB; Ohnesorg T; Pinese M; Thomas DM; Zankl A; Roscioli T; Schonrock N; Kummerfeld S; Burnett L; Dinger ME; Cowley MJ, 2021, 'ClinSV: clinical grade structural and copy number variant detection from whole genome sequencing data', Genome Medicine, 13, pp. 32, http://dx.doi.org/10.1186/s13073-021-00841-x

Taheri M; Shoorei H; Tondro Anamag F; Ghafouri-Fard S; Dinger ME, 2021, 'LncRNAs and miRNAs participate in determination of sensitivity of cancer cells to cisplatin', Experimental and Molecular Pathology, 123, http://dx.doi.org/10.1016/j.yexmp.2021.104602

Ghafouri-Fard S; Dinger ME; Maleki P; Taheri M; Hajiesmaeili M, 2021, 'Emerging role of circular RNAs in the pathobiology of lung cancer', Biomedicine and Pharmacotherapy, 141, http://dx.doi.org/10.1016/j.biopha.2021.111805

Ma A; Grigg JR; Flaherty M; Smith J; Minoche AE; Cowley MJ; Nash BM; Ho G; Gayagay T; Lai T; Farnsworth E; Hackett EL; Slater K; Wong K; Holman KJ; Jenkins G; Cheng A; Martin F; Brown NJ; Leighton SE; Amor DJ; Goel H; Dinger ME; Bennetts B; Jamieson RV, 2021, 'Genome sequencing in congenital cataracts improves diagnostic yield', Human Mutation, 42, pp. 1173 - 1183, http://dx.doi.org/10.1002/humu.24240

Field MJ; Kumar R; Hackett A; Kayumi S; Shoubridge CA; Ewans LJ; Ivancevic AM; Dudding-Byth T; Carroll R; Kroes T; Gardner AE; Sullivan P; Ha TT; Schwartz CE; Cowley MJ; Dinger ME; Palmer EE; Christie L; Shaw M; Roscioli T; Gecz J; Corbett MA, 2021, 'Different types of disease-causing noncoding variants revealed by genomic and gene expression analyses in families with X-linked intellectual disability', Human Mutation, 42, pp. 835 - 847, http://dx.doi.org/10.1002/humu.24207

Mallawaarachchi AC; Lundie B; Hort Y; Schonrock N; Senum SR; Gayevskiy V; Minoche AE; Hollway G; Ohnesorg T; Hinchcliffe M; Patel C; Tchan M; Mallett A; Dinger ME; Rangan G; Cowley MJ; Harris PC; Burnett L; Shine J; Furlong TJ, 2021, 'Genomic diagnostics in polycystic kidney disease: an assessment of real-world use of whole-genome sequencing', European Journal of Human Genetics, 29, pp. 760 - 770, http://dx.doi.org/10.1038/s41431-020-00796-4

Noroozi R; Dinger ME; Fatehi R; Taheri M; Ghafouri-Fard S, 2021, 'Identification of miRNA-mRNA Network in Autism Spectrum Disorder Using a Bioinformatics Method', Journal of Molecular Neuroscience, 71, pp. 761 - 766, http://dx.doi.org/10.1007/s12031-020-01695-5

Akbari Dilmaghnai N; Shoorei H; Sharifi G; Mohaqiq M; Majidpoor J; Dinger ME; Taheri M; Ghafouri-Fard S, 2021, 'Non-coding RNAs modulate function of extracellular matrix proteins', Biomedicine and Pharmacotherapy, 136, http://dx.doi.org/10.1016/j.biopha.2021.111240

Palmer EE; Sachdev R; Macintosh R; Melo US; Mundlos S; Righetti S; Kandula T; Minoche AE; Puttick C; Gayevskiy V; Hesson L; Idrisoglu S; Shoubridge C; Thai MHN; Davis RL; Drew AP; Sampaio H; Andrews PI; Lawson J; Cardamone M; Mowat D; Colley A; Kummerfeld S; Dinger ME; Cowley MJ; Roscioli T; Bye A; Kirk E, 2021, 'Diagnostic Yield of Whole Genome Sequencing After Nondiagnostic Exome Sequencing or Gene Panel in Developmental and Epileptic Encephalopathies', Neurology, 96, pp. E1770 - E1782, http://dx.doi.org/10.1212/WNL.0000000000011655

Keon M; Musrie B; Dinger M; Brennan SE; Santos J; Saksena NK, 2021, 'Destination Amyotrophic Lateral Sclerosis', Frontiers in Neurology, 12, pp. 596006, http://dx.doi.org/10.3389/fneur.2021.596006

Hussen BM; Shoorei H; Mohaqiq M; Dinger ME; Hidayat HJ; Taheri M; Ghafouri-Fard S, 2021, 'The Impact of Non-coding RNAs in the Epithelial to Mesenchymal Transition', Frontiers in Molecular Biosciences, 8, pp. 665199, http://dx.doi.org/10.3389/fmolb.2021.665199

Ebahimzadeh K; Shoorei H; Mousavinejad SA; Anamag FT; Dinger ME; Taheri M; Ghafouri-Fard S, 2021, 'Emerging role of non-coding RNAs in response of cancer cells to radiotherapy', Pathology Research and Practice, 218, http://dx.doi.org/10.1016/j.prp.2020.153327

Cheng Y-Y; Nunn J; Skinner J; Rambaldini B; Boughtwood T; Calma T; Brown A; Meldrum C; Dinger ME; Byrne JA; McCowen D; Potter J; Faires K; Cooper S; Gwynne K, 2021, 'A Pathway to Precision Medicine for Aboriginal Australians: A Study Protocol', Methods and Protocols, 4, pp. 42, http://dx.doi.org/10.3390/mps4020042

Taheri M; Eghtedarian R; Dinger ME; Ghafouri-Fard S, 2020, 'Dysregulation of non-coding RNAs in autoimmune thyroid disease', Experimental and Molecular Pathology, 117, http://dx.doi.org/10.1016/j.yexmp.2020.104527

Safa A; Gholipour M; Dinger ME; Taheri M; Ghafouri-Fard S, 2020, 'The critical roles of lncRNAs in the pathogenesis of melanoma', Experimental and Molecular Pathology, 117, http://dx.doi.org/10.1016/j.yexmp.2020.104558

Pinese M; Lacaze P; Rath EM; Stone A; Brion MJ; Ameur A; Nagpal S; Puttick C; Husson S; Degrave D; Cristina TN; Kahl VFS; Statham AL; Woods RL; McNeil JJ; Riaz M; Barr M; Nelson MR; Reid CM; Murray AM; Shah RC; Wolfe R; Atkins JR; Fitzsimmons C; Cairns HM; Green MJ; Carr VJ; Cowley MJ; Pickett HA; James PA; Powell JE; Kaplan W; Gibson G; Gyllensten U; Cairns MJ; McNamara M; Dinger ME; Thomas DM, 2020, 'The Medical Genome Reference Bank contains whole genome and phenotype data of 2570 healthy elderly', Nature Communications, 11, pp. 435, http://dx.doi.org/10.1038/s41467-019-14079-0

Taheri M; Eghtedarian R; Dinger ME; Ghafouri-Fard S, 2020, 'Dysregulation of non-coding RNAs in Rheumatoid arthritis', Biomedicine and Pharmacotherapy, 130, http://dx.doi.org/10.1016/j.biopha.2020.110617

Ma A; Yousoof S; Grigg JR; Flaherty M; Minoche AE; Cowley MJ; Nash BM; Ho G; Gayagay T; Lai T; Farnsworth E; Hackett EL; Fisk K; Wong K; Holman KJ; Jenkins G; Cheng A; Martin F; Karaconji T; Elder JE; Enriquez A; Wilson M; Amor DJ; Stutterd CA; Kamien B; Nelson J; Dinger ME; Bennetts B; Jamieson RV, 2020, 'Revealing hidden genetic diagnoses in the ocular anterior segment disorders', Genetics in Medicine, 22, pp. 1623 - 1632, http://dx.doi.org/10.1038/s41436-020-0854-x

Taheri M; Eghtedarian R; Dinger ME; Ghafouri-Fard S, 2020, 'Emerging roles of non-coding RNAs in the pathogenesis of type 1 diabetes mellitus', Biomedicine and Pharmacotherapy, 129, http://dx.doi.org/10.1016/j.biopha.2020.110509

Easteal S; Arkell RM; Balboa RF; Bellingham SA; Brown AD; Calma T; Cook MC; Davis M; Dawkins HJS; Dinger ME; Dobbie MS; Farlow A; Gwynne KG; Hermes A; Hoy WE; Jenkins MR; Jiang SH; Kaplan W; Leslie S; Llamas B; Mann GJ; McMorran BJ; McWhirter RE; Meldrum CJ; Nagaraj SH; Newman SJ; Nunn JS; Ormond-Parker L; Orr NJ; Paliwal D; Patel HR; Pearson G; Pratt GR; Rambaldini B; Russell LW; Savarirayan R; Silcocks M; Skinner JC; Souilmi Y; Vinuesa CG; Baynam G, 2020, 'Equitable Expanded Carrier Screening Needs Indigenous Clinical and Population Genomic Data', American Journal of Human Genetics, 107, pp. 175 - 182, http://dx.doi.org/10.1016/j.ajhg.2020.06.005

Thomson DW; Shahrin NH; Wang PPS; Wadham C; Shanmuganathan N; Scott HS; Dinger ME; Hughes TP; Schreiber AW; Branford S, 2020, 'Aberrant RAG-mediated recombination contributes to multiple structural rearrangements in lymphoid blast crisis of chronic myeloid leukemia', Leukemia, 34, pp. 2051 - 2063, http://dx.doi.org/10.1038/s41375-020-0751-y

Taheri M; Shoorei H; Dinger ME; Ghafouri-Fard S, 2020, 'Perspectives on the role of non-coding rnas in the regulation of expression and function of the estrogen receptor', Cancers, 12, pp. 1 - 26, http://dx.doi.org/10.3390/cancers12082162

Taheri M; Eghtedarian R; Dinger ME; Ghafouri-Fard S, 2020, 'Exploring the role of non-coding rnas in the pathophysiology of systemic lupus erythematosus', Biomolecules, 10, pp. 1 - 22, http://dx.doi.org/10.3390/biom10060937

Cheetham SW; Faulkner GJ; Dinger ME, 2020, 'Overcoming challenges and dogmas to understand the functions of pseudogenes', Nature Reviews Genetics, 21, pp. 191 - 201, http://dx.doi.org/10.1038/s41576-019-0196-1

Moradi Marjaneh M; Beesley J; O'Mara TA; Mukhopadhyay P; Koufariotis LT; Kazakoff S; Hussein N; Fachal L; Bartonicek N; Hillman KM; Kaufmann S; Sivakumaran H; Smart CE; McCart Reed AE; Ferguson K; Saunus JM; Lakhani SR; Barnes DR; Antoniou AC; Dinger ME; Waddell N; Easton DF; Dunning AM; Chenevix-Trench G; Edwards SL; French JD, 2020, 'Non-coding RNAs underlie genetic predisposition to breast cancer', Genome Biology, 21, pp. 7, http://dx.doi.org/10.1186/s13059-019-1876-z

Van Bergen NJ; Ahmed SM; Collins F; Cowley M; Vetro A; Dale RC; Hock DH; De Caestecker C; Minal M; Massey S; Gladys H; Pisano T; Glover S; Gusman J; Stroud DA; Dinger M; Guerrini R; MacAra IG; Christodoulou J, 2020, 'Mutations in the exocyst component EXOC2 cause severe defects in human brain development', Journal of Experimental Medicine, 217, pp. e20192040, http://dx.doi.org/10.1084/JEM.20192040

Liu PY; Tee AE; Milazzo G; Hannan KM; Maag J; Mondal S; Atmadibrata B; Bartonicek N; Peng H; Ho N; Mayoh C; Ciaccio R; Sun Y; Henderson MJ; Gao J; Everaert C; Hulme AJ; Wong M; Lan Q; Cheung BB; Shi L; Wang JY; Simon T; Fischer M; Zhang XD; Marshall GM; Norris MD; Haber M; Vandesompele J; Li J; Mestdagh P; Hannan RD; Dinger ME; Perini G; Liu T, 2019, 'The long noncoding RNA lncNB1 promotes tumorigenesis by interacting with ribosomal protein RPL35', Nature Communications, 10, pp. 5026, http://dx.doi.org/10.1038/s41467-019-12971-3

McCabe M; Gauthier M-E; Chan C-L; Thompson T; De Sousa S; Puttick C; Grady J; Gayevskiy V; Tao J; Ying K; Cipponi A; Deng N; Swarbrick A; Thomas M; kConFab ; Lord R; Johns A; Kohonen-Corish M; O'Toole S; Clark J; Mueller S; Gupta R; McCormack A; Dinger M; Cowley M; Bastick P; Friedlander M; Colley A; Andrews L; Young M-A; Tucker K; Williams R, 2019, 'Development and validation of a targeted gene sequencing panel for application to disparate cancers', Scientific Reports, 9, pp. 17052, http://dx.doi.org/10.1038/s41598-019-52000-3

Stark Z; Nisselle A; McClaren B; Lynch F; Best S; Long JC; Martyn M; Patel C; Schlapbach LJ; Barnett C; Theda C; Pinner J; Dinger ME; Lunke S; Gaff CL, 2019, 'Attitudes of Australian health professionals towards rapid genomic testing in neonatal and paediatric intensive care', European Journal of Human Genetics, 27, pp. 1493 - 1501, http://dx.doi.org/10.1038/s41431-019-0429-y

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