By Professor Marc Wilkins

Conference Posters

Dong C; Vazquez Campos X; Deshpande NANDAN; Zhang P; Wilkins M; Park RF, 2017, 'Understanding oat stem rust pathogen genome by PacBio sequencing', Sydney, Australia, presented at Sydney Bioinformatics Research Symposium 2017, Sydney, Australia, 13 June 2017 - 13 June 2017

Deshpande N; Wilkins M; Mitchell H; Kaakoush N, 2016, 'Deciphering the role of Campylobacter concisus in host pathogenesis using multi-omics techniques', Charles Perkins Centre, University of Sydney, presented at SBRS 2016, Charles Perkins Centre, University of Sydney, 22 July 2016 - 22 July 2016

CORLEY SM; Wilkins MR, 2016, 'RNA-Seq: Is paired-end sequencing always better for gene expression analysis', Sydney, presented at SBRS 2016, Sydney, 22 July 2016 - 22 July 2016

Deshpande N; Wilkins M; Mitchell H; Kaakoush NO, 2016, 'SBRS 2016', Charles Perkins Centre, University of Sydney, presented at SBRS 2016, Charles Perkins Centre, University of Sydney, 22 July 2016 - 22 July 2016, http://www.abacbs.org/sbrs_2016/

Kaakoush NO; Mitchell H; Wilkins M; Deshpande N, 2013, 'Comparative genomics of eight Campylobacter concisus isolates provides insights into pathogenesis', presented at Lorne Genome Conference 2013, 17 February 2013 - 19 February 2013

Conference Presentations

Carter A; Lai YW; Pang CNI; Campbell LT; Truong M; Chen S; Wilkins M, 2014, 'Understanding synergy between iron chelators and antifungals using gene co-expression networks', http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=000335090600227&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Conference Abstracts

Roddam L; Pagnon JC; Page S; Ali N; Ambrose M; Cooley MA; Griffin PE; Corley SM; Wilkins MR, 2024, 'Human cells treated extracellularly with rhpon2 are protected from detrimental 3oc12-hsl-mediated effects', in Respirology, Wiley, Vol. 29, pp. 41 - 42, presented at 15th Australasian Cystic Fibrosis Conference, https://doi.org/10.1111/resp.14771

Katelaris A; Canagasingham A; Ni J; Deshpande N; Malouf D; Bucci J; Thompson J; Bai X; Pang B; Zhu Y; Wilkins M; Graham P; Li Y, 2022, 'Isolation of exosomal microRNA to serve as a diagnostic biomarker for prostate cancer: A provisional analysis of 12 patients', in BJU INTERNATIONAL, WILEY, AUSTRALIA, Gold Coast, Vol. 129, pp. 140 - 140, presented at Annual Scientific Meeting of the Urological-Society-of-Australia-and-New Zealand, AUSTRALIA, Gold Coast, 25 June 2022 - 28 June 2022, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000808481200227&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Paramsothy S; Kamm M; Nielsen S; Deshpande N; Faith J; Clemente J; Paramsothy R; Walsh A; van den Bogaerde J; Samuel D; Leong R; Connor S; Ng W; Lin E; Wilkins M; Colombel J-F; Borody T; Mitchell H; Kaakoush N, 2018, 'In faecal microbiota transplantation (FMT) for ulcerative colitis, fusobacterium is associated with lack of remission, while metabolic shifts to starch degradation and short-chain fatty acid production are associated with remission (FOCUS study)', in JOURNAL OF CROHNS & COLITIS, OXFORD UNIV PRESS, Vol. 12, pp. S13 - S14

Software / Code

Van Dyk DD; Misztal D; Wilkins MR; Mackintosh JA; Walsh BR; Gray PP, 1999, Chinese hamster ovary two dimensional polyacrylamide gel electrophonesis database, Video, Published: 1999, Software / Code

Preprints

Liang A; Wilkins MR, 2025, Alternative splicing in 300 human cells and tissues is sparsely distributed and strongly associated with cell identity, http://dx.doi.org/10.1101/2025.01.06.631625

Hamey JJ; Shah M; Wade JD; Bartolec TK; Wettenhall REH; Quinlan KGR; Williamson NA; Wilkins MR, 2024, SMYD5 is a ribosomal methyltransferase which trimethylates RPL40 lysine 22 through recognition of a KXY motif, http://dx.doi.org/10.1101/2024.10.10.616381

Su G; Wang H; Zhang Y; Coster ACF; Wilkins MR; Canete PF; Yu D; Yang Y; Zhang W, 2024, Inferring gene regulatory networks by hypergraph variational autoencoder, http://dx.doi.org/10.1101/2024.04.01.586509

Manandhar B; Pandzic E; Deshpande N; Chen S-Y; Wasinger V; Kockx M; Glaros E; Ong KL; Thomas SR; Wilkins MR; Whan RM; Cochran BJ; Rye K-A, 2023, ApoA-I Protects Pancreatic β-cells from Cholesterol-induced Mitochondrial Damage and Restores their Ability to Secrete Insulin, http://dx.doi.org/10.1101/2023.04.03.535492

Bartolec T; Vázquez-Campos X; Norman A; Luong C; Payne R; Wilkins M; Mackay J; Low J, 2022, Cross-linking mass spectrometry discovers, evaluates, and validates the experimental and predicted structural proteome, http://dx.doi.org/10.1101/2022.11.16.516813

Kopecky C; Haug M; Reischl B; Deshpande N; Manandhar B; King T; Lee V; Wilkins M; Morris M; Polly P; Friedrich O; Rye K-A; Cochran B, 2022, Effect of insulin insufficiency on ultrastructure and function in skeletal muscle, http://dx.doi.org/10.1101/2022.12.18.520900

Kronen M; Vázquez-Campos X; Wilkins M; Lee M; Manefield M, 2022, Evidence for a putative isoprene reductase inAcetobacterium wieringae, http://dx.doi.org/10.1101/2022.11.16.516518

Bell K; Saad S; Tillett B; McGuire H; Bordbar S; Yap YA; Nguyen L; Wilkins M; Corley S; Brodie S; Duong S; Wright C; Twigg S; de St Groth BF; Harrison L; Mackay C; Gurzov E; Hamilton-Williams E; Mariño E, 2021, Metabolite-based dietary supplementation in human type 1 diabetes is associated with microbiota and immune modulation, http://dx.doi.org/10.1101/2021.09.15.21263059

Bayat A; Gamaarachchi H; Deshpande N; Wilkins M; Parameswaran S, 2020, Methods for De-novo Genome Assembly, http://dx.doi.org/10.20944/preprints202006.0324.v1

Kim KW; Deveson I; Pang CN; Yeang M; Naing Z; Adikari T; Hammond J; Stevanovski I; Beukers A; Verich A; Yin S; McFarlane D; Wilkins M; Stelzer-Braid S; Bull R; Craig M; Hal SV; Rawlinson W, 2020, Respiratory viral co-infections among SARS-CoV-2 cases confirmed by virome capture sequencing, http://dx.doi.org/10.21203/rs.3.rs-105996/v1

Anande G; Deshpande N; Mareschal S; Batcha A; Hampton H; Herold T; Lehmann S; Wilkins M; Wong JWH; Unnikrishnan A; Pimanda J, 2020, RNA splicing alterations induce a cellular stress response associated with poor prognosis in AML, http://dx.doi.org/10.1101/2020.01.10.895714

Vázquez-Campos X; Kinsela A; Bligh M; Payne T; Wilkins M; Waite D, 2019, Genomic insights into the Archaea inhabiting an Australian radioactive legacy site, http://dx.doi.org/10.1101/728089

Kasumovic M; Chen Z; Wilkins MR, 2016, Australian black field crickets show changes in neural gene expression associated with socially-induced morphological, life-history, and behavioral plasticity, http://dx.doi.org/10.7287/peerj.preprints.1941

Kasumovic M; Chen Z; Wilkins MR, 2016, Australian black field crickets show changes in neural gene expression associated with socially-induced morphological, life-history, and behavioral plasticity, http://dx.doi.org/10.7287/peerj.preprints.1941v1

Wilkins MR; Appel RD; Van Eyk JE; Chung MCM; Görg A; Hecker M; Huber LA; Langen H; Link AJ; Paik Y-K; Patterson SD; Pennington SR; Rabilloud T; Simpson RJ; Weiss W; Dunn MJ, 2009, Guidelines for the next 10 years of proteomics, http://dx.doi.org/10.48550/arxiv.0904.0788

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