By Professor Marc Wilkins

Journal articles

Wilkins MR, 2010, 'Proteins deleterious on overexpression are associated with high intrinsic disorder, specific interaction domains, and low abundance.', Journal of Proteome Research, 9, pp. 1218 - 1225

Okoli AS; Wilkins MR; Raftery MJ; Mendz GL, 2010, 'Response of Helicobacter hepaticus to bovine bile', Journal of Proteome Research, 9, pp. 1374 - 1384

Kaakoush NO; Man SM; Lamb S; Raftery MJ; Wilkins MR; Kovach Z; Mitchell HM, 2010, 'The secretome of Campylobacter concisus.', FEBS Journal, 277, pp. 1606 - 1617

Fung DCY; Wilkins MR; Hart D; Hong S-H, 2010, 'Using the clustered circular layout as an informative method for visualizing protein-protein interaction networks.', Proteomics, 10, pp. 2327 - 2723, http://dx.doi.org/10.1002/pmic.201000046

Wilkins M, 2009, 'A celebration of protein-protein interactions', Proteomics, 9, pp. 5207 - 5208, http://dx.doi.org/10.1002/pmic.200990092

Wilkins MR, 2009, 'Hares and tortoises: The high- versus low-throughput proteomic race', Electrophoresis, 30, pp. S150 - S155, http://dx.doi.org/10.1002/elps.200900175

Erce MA; Low J; March P; Wilkins MR; Takayama KM, 2009, 'Identification and functional analysis of RNase E of Vibrio angustum S14 and two-hybrid analysis of its interaction partners', Biochimica et Biophysica ACTA - Proteins and Proteomics, 1794, pp. 1107 - 1114

Little P; Williams RA; Wilkins MR, 2009, 'Inter-individual variation in expression: a missing link in biomarker biology?', Trends in Biotechnology, 27, pp. 5 - 10

Huang K; Filarsky M; Padula M; Raftery MJ; Herbert B; Wilkins MR, 2009, 'Micropreparative fractionation of the complexome by blue native continuous elution electrophoresis', Proteomics, 9, pp. 2494 - 2502

Wilkins MR, 2009, 'Proteomic data mining', Expert Review of Proteomics, 6, pp. 599 - 603

Widjaja YY; Pang CN; Wilkins MR; Lambert TD; Li SS, 2009, 'The Interactorium: visualising proteins, complexes and interaction networks in a virtual 3-D cell.', Proteomics, 9, pp. 5309 - 5315

Pang CN; Krycer JR; Lek A; Wilkins MR, 2008, 'Are protein complexes made of cores, modules and attachments?', Proteomics, 8, pp. 425 - 434, http://dx.doi.org/10.1002/pmic.200700801

Krycer JR; Pang CN; Wilkins MR; Pang I, 2008, 'High throughput protein-protein interaction data: clues for the architecture of protein complexes', Proteome Science, 6, pp. 32 - 32, http://dx.doi.org/10.1186/1477-5956-6-32

Couttas TA; Raftery MJ; Bernardini G; Wilkins MR, 2008, 'Immonium ion scanning for the discovery of post-translational modifications and its application to histones', Journal of Proteome Research, 7, pp. 2632 - 2641

Wilkins MR; Arthur J; Junius F; Harrison M; Traini M; Bizannes P; Doggett P; McDonald W, 2008, 'Information management for proteomics: a perspective', Expert Review of Proteomics, 5, pp. 663 - 678

Ho E; Webber R; Wilkins MR, 2008, 'Interactive three-dimensional visualization and contextual analysis of protein interaction networks', Journal of Proteome Research, 7, pp. 104 - 112, http://dx.doi.org/10.1021/pr070274m

Deshpande N; Wilkins MR; Packer N; Nevalainen H, 2008, 'Protein glycosylation pathways in filamentous fungi', Glycobiology, 18, pp. 626 - 637

Wilkins MR; Kummerfeld SK, 2008, 'Sticking together? Falling apart? Exploring the dynamics of the interactome', Trends in Biochemical Sciences, 33, pp. 195 - 200, http://dx.doi.org/10.1016/j.tibs.2008.03.001

Okoli AS; Wilkins MR; Raftery M; Mendz GL, 2007, 'Comparative proteomics study of effects of Helicobacter bilis on Huh7, Huh7 NNeo3-5B(RG), and cured-Huh7 NNeo3-SB(RG) cell lines', Helicobacter, 12, pp. 382 - 383

Wilkins MR, 2007, 'Lower-order versus higher-order proteomics: Time to move up?', Journal of Proteome Research, 6, pp. 2403

Hsu W; Pang CN; Sheetal J; Wilkins MR, 2007, 'Protein-protein interactions and disease: Use of S-cerevisiae as a model system', Biochimica et Biophysica ACTA - Proteins and Proteomics, 1774, pp. 838 - 847

Pang CN; Hayen A; Wilkins MR, 2007, 'Surface accessibility of protein post-translational modifications', Journal of Proteome Research, 6, pp. 1833 - 1845

Taylor C; Paton N; Lilley K; Binz P; Julian R; Jones AR; Zhu W; Apweiler R; Aebersold R; Deutsch E; Dunn MJ; Heck A; Leitner A; Macht M; Mann M; Martens L; Neubert T; Patterson S; Ping P; Seymour S; Souda P; Tsugita A; Vandekerckhove J; Vondriska T; Whitelegge J; Wilkins MR; Xenarios I; Yates J; Hermjakob H, 2007, 'The minimum information about a proteomics experiment (MIAPE)', Nature Biotechnology, 25, pp. 887 - 893

Ho E; Hayen A; Wilkins MR, 2006, 'Characterisation of organellar proteomes: A guide to subcellular proteomic fractionation and analysis', Proteomics, 6, pp. 5746 - 5757

Wilkins MR; Appel R; Van Eyk J; Chung M; Gorg A; Hecker M; Huber L; Langen H; Link A; Paik Y; Patterson S; Pennington S; Rabilloud T; Simpson RJ; Weiss WA; Dunn MJ, 2006, 'Guidelines for the next 10 years of proteomics', Proteomics, 6, pp. 4 - 8

Wilkins MR, 2006, 'How proteomics can assist in the detection and avoidance of adverse drug reactions', Transfusion Medicine and Hemotherapy, 33, pp. 97 - 105

Hunt S; Thomas MR; Sebastian LT; Pedersen SK; Harcourt RL; Sloane AJ; Wilkins MR, 2005, 'Optimal replication and the importance of experimental design for gel-based quantitative proteomics', Journal of Proteome Research, 4, pp. 663

Arthur J; Wilkins MR, 2004, 'Using proteomics to mine genome sequences', Journal of Proteome Research, 3, pp. 393 - 402

Breen EJ; Holstein WL; Hopwood FG; Smith PE; Thomas ML; Wilkins MR, 2003, 'Automated peak harvesting of MALDI-MS spectra for high throughput proteomics', Spectroscopy-An International Journal, 17, pp. 579 - 596

Cooper CA; Joshi HJ; Harrison M; Wilkins MR; Packer N, 2003, 'GlycosuiteDB : a curated relational database of glycoprotein glycan structures and their biological sources', Nucleic Acids Research, 31, pp. 511 - 513

Van Dyk DD; Misztal DD; Wilkins MR; Poljak A; Mackintosh JA; Varnai JC; Teber E; Walsh B; Gray PP, 2003, 'Identification of cellular changes associated with increased production of human growth hormone in a recombinant Chinese hamster ovary cell line.', Proteomics, 3, pp. 147 - 156

Pedersen SK; Harry JL; Sebastian LT; Baker J; Traini M; McCarthy JT; Manoharan A; Wilkins MR; Gooley AA; Righetti PG; Packer N; Williams KL; Herbert B, 2003, 'Unseen proteome: mining below the tip of the iceberg to find low abundance and membrane proteins', Journal of Proteome Research, 2, pp. 303 - 311, http://dx.doi.org/10.1021/pr025588i

Cooper CA; Harrison MJ; Webster JM; Wilkins MR; Packer NH, 2002, 'Data standardisation in GlycoSuiteDB.', Pacific Symposium on Biocomputing Pacific Symposium on Biocomputing, pp. 297 - 309

Cooper CA; Harrison MJ; Wilkins MR; Packer NH, 2001, 'GlycoSuiteDB: A new curated relational database of glycoprotein glycan structures and their biological sources', Nucleic Acids Research, 29, pp. 332 - 335, http://dx.doi.org/10.1093/nar/29.1.332

Lisacek FC; Traini MD; Sexton D; Harry JL; Wilkins MR, 2001, 'Strategy for protein isoform identification from expressed sequence tags and its application to peptide mass fingerprinting', Proteomics, 1, pp. 186 - 193, http://dx.doi.org/10.1002/1615-9861(200102)1:2<186::AID-PROT186>3.0.CO;2-G

Emslie KR; Molloy MP; Barardi CRM; Jardine D; Wilkins MR; Bellamy AR; Williams KL, 2000, 'Serotype classification and characterisation of the rotavirus SA11 VP6 protein using mass spectrometry and two-dimensional gel electrophoresis', Functional and Integrative Genomics, 1, pp. 12 - 24, http://dx.doi.org/10.1007/s101420000002

Breen EJ; Hopwood FG; Williams KL; Wilkins MR, 2000, 'Automatic Poisson peak harvesting for high throughput protein identification', Electrophoresis, 21, pp. 2243 - 2251, http://dx.doi.org/10.1002/1522-2683(20000601)21:11<2243::AID-ELPS2243>3.0.CO;2-K

Kojima T; Andersen E; Sanchez JC; Wilkins MR; Hochstrasser DF; Pralong WF; Cimasoni G, 2000, 'Human gingival crevicular fluid contains mrp8 (s100a8) and mrp 14 (s100a9), two calcium-binding proteins of the s100 family', Journal of Dental Research, 79, pp. 740 - 747, http://dx.doi.org/10.1177/00220345000790020701

Wilkins M, 2000, 'Proteomic paradigms for perceiving purpose', Trends in Biotechnology, 18, pp. 91 - 92, http://dx.doi.org/10.1016/S0167-7799(99)01403-1

Harry JL; Wilkins MR; Herbert BR; Packer NH; Gooley AA; Williams KL, 2000, 'Proteomics: Capacity versus utility', Electrophoresis, 21, pp. 1071 - 1081, http://dx.doi.org/10.1002/(SICI)1522-2683(20000401)21:6<1071::AID-ELPS1071>3.0.CO;2-M

Ou K; Wilkins MR; Gooley AA; Tonella L; Sanchez JC; Tyler M; Walsh BJ; Pasquali C; Hochstrasser DF; Williams KL, 1999, 'Rapid identification and quantitation of Escherichia coli proteins separated by 2-D electrophoresis', American Biotechnology Laboratory, 17, pp. 16 - 20

Binz PA; Muller M; Walther D; Bienvenut WV; Gras R; Hoogland C; Bouchet G; Gasteiger E; Fabbretti R; Gay S; Palagi P; Wilkins MR; Rouge V; Tonella L; Paesano S; Rossellat G; Karmime A; Bairoch A; Sanchez JC; Appel RD; Hochstrasser DF, 1999, 'A molecular scanner to automate proteomic research and to display proteome images', Analytical Chemistry, 71, pp. 4981 - 4988, http://dx.doi.org/10.1021/ac990449e

Wilkins MR; Gasteiger E; Gooley AA; Herbert BR; Molloy MP; Binz PA; Ou K; Sanchez JC; Bairoch A; Williams KL; Hochstrasser DF, 1999, 'High-throughput mass spectrometric discovery of protein post-translational modifications', Journal of Molecular Biology, 289, pp. 645 - 657, http://dx.doi.org/10.1006/jmbi.1999.2794

Wilkins MR; Yan JX; Gooley AA, 1999, '2-DE spot amino acid analysis with 9-fluorenylmethyl chloroformate.', Methods in Molecular Biology Clifton N J, 112, pp. 445 - 460

Cooper CA; Wilkins MR; Williams KL; Packer NH, 1999, 'BOLD - A biological O-linked glycan database', Electrophoresis, 20, pp. 3589 - 3598, http://dx.doi.org/10.1002/(SICI)1522-2683(19991201)20:18<3589::AID-ELPS3589>3.0.CO;2-M

Wilkins MR; Gasteiger E; Bairoch A; Sanchez JC; Williams KL; Appel RD; Hochstrasser DF, 1999, 'Protein identification and analysis tools in the ExPASy server.', Methods in Molecular Biology Clifton N J, 112, pp. 531 - 552

Wilkins MR; Gasteiger E; Tonella L; Ou K; Tyler M; Sanchez JC; Gooley AA; Walsh BJ; Bairoch A; Appel RD; Williams KL; Hochstrasser DF, 1998, 'Protein identification with N and C-terminal sequence tags in proteome projects', Journal of Molecular Biology, 278, pp. 599 - 608, http://dx.doi.org/10.1006/jmbi.1998.1726

Tonella L; Walsh BJ; Sanchez JC; Ou K; Wilkins MR; Tyler M; Frutiger S; Gooley AA; Pescaru I; Appel RD; Yan JX; Bairoch A; Hoogland C; Morch FS; Hughes GJ; Williams KL; Hochstrasser DF, 1998, ''98 Escherichia coli SWISS-2DPAGE database update', Electrophoresis, 19, pp. 1960 - 1971, http://dx.doi.org/10.1002/elps.1150191114

Wilkins MR; Gasteiger E; Wheeler CH; Lindskog I; Sanchez JC; Bairoch A; Appel RD; Dunn MJ; Hochstrasser DF, 1998, 'Multiple parameter cross-species protein identification using MultiIdent - A world-wide web accessible tool', Electrophoresis, 19, pp. 3199 - 3206, http://dx.doi.org/10.1002/elps.1150191824

Traini M; Gooley AA; Ou K; Wilkins MR; Tonella L; Sanchez JC; Hochstrasser DF; Williams KL, 1998, 'Towards an automated approach for protein identification in proteome projects', Electrophoresis, 19, pp. 1941 - 1949, http://dx.doi.org/10.1002/elps.1150191112

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