By Scott Berry

Journal articles

Tucker SG; May B; Liversedge M; Berry S; Keck JW; Hoover AG, 2025, 'COVID-19 Risk and Crisis Communication Challenges and Opportunities: Qualitative Insights from Rural Wastewater Surveillance Partners', DISASTER MEDICINE AND PUBLIC HEALTH PREPAREDNESS, 19, http://dx.doi.org/10.1017/dmp.2025.36

Alameh S; Hoover AG; Keck JW; Berry SM; Goodpaster S; Tucker S; Goodin A, 2025, 'Bringing Pandemic Science to the Classroom: Building Public Health Capacity at a Rural Kentucky High School', PUBLIC HEALTH REPORTS, http://dx.doi.org/10.1177/00333549241302621

Yin JA; Frick L; Scheidmann MC; Liu T; Trevisan C; Dhingra A; Spinelli A; Wu Y; Yao L; Vena DL; Knapp B; Guo J; De Cecco E; Ging K; Armani A; Oakeley EJ; Nigsch F; Jenzer J; Haegele J; Pikusa M; Täger J; Rodriguez-Nieto S; Bouris V; Ribeiro R; Baroni F; Bedi MS; Berry S; Losa M; Hornemann S; Kampmann M; Pelkmans L; Hoepfner D; Heutink P; Aguzzi A, 2025, 'Arrayed CRISPR libraries for the genome-wide activation, deletion and silencing of human protein-coding genes', Nature Biomedical Engineering, 9, pp. 127 - 148, http://dx.doi.org/10.1038/s41551-024-01278-4

Cacioppo R; Gillis A; Shlamovitz I; Zeller A; Castiblanco D; Crisp A; Haworth B; Arabiotorre A; Abyaneh P; Bao Y; Sale JE; Berry S; Tufegdžić Vidaković A, 2024, 'CRL3ARMC5 ubiquitin ligase and Integrator phosphatase form parallel mechanisms to control early stages of RNA Pol II transcription', Molecular Cell, 84, pp. 4808 - 4823.e13, http://dx.doi.org/10.1016/j.molcel.2024.11.024

Gillis A; Berry S, 2024, 'Global control of RNA polymerase II', Biochimica Et Biophysica Acta Gene Regulatory Mechanisms, 1867, pp. 195024, http://dx.doi.org/10.1016/j.bbagrm.2024.195024

Banadaki MD; Torabi S; Rockward A; Strike WD; Noble A; Keck JW; Berry SM, 2024, 'Simple SARS-CoV-2 concentration methods for wastewater surveillance in low resource settings', SCIENCE OF THE TOTAL ENVIRONMENT, 912, http://dx.doi.org/10.1016/j.scitotenv.2023.168782

Albain KS; Yau C; Petricoin EF; Wolf DM; Lang JE; Chien AJ; Haddad T; Forero-Torres A; Wallace AM; Kaplan H; Pusztai L; Euhus D; Nanda R; Elias AD; Clark AS; Godellas C; Boughey JC; Isaacs C; Tripathy D; Lu J; Yung RL; Gallagher RI; Wulfkuhle JD; Brown-Swigart L; Krings G; Chen YY; Potter DA; Stringer-Reasor E; Blair S; Asare SM; Wilson A; Hirst GL; Singhrao R; Buxton M; Clennell JL; Sanil A; Berry S; Asare AL; Matthews JB; Demichele AM; Hylton NM; Melisko M; Perlmutter J; Rugo HS; Symmans WF; van't Veer LJ; Yee D; Berry DA; Esserman LJ, 2024, 'Neoadjuvant Trebananib plus Paclitaxel-based Chemotherapy for Stage II/III Breast Cancer in the Adaptively Randomized I-SPY2 Trial-Efficacy and Biomarker Discovery', CLINICAL CANCER RESEARCH, 30, pp. 729 - 740, http://dx.doi.org/10.1158/1078-0432.CCR-22-2256

Banadaki MD; Rummel NG; Backus S; Butterfield DA; Clair DKS; Campbell JM; Zhong W; Mayer K; Berry SM; Chaiswing L, 2024, 'Correction to: Extraction of redox extracellular vesicles using exclusion-based sample preparation', ANALYTICAL AND BIOANALYTICAL CHEMISTRY, 416, pp. 7187 - 7188, http://dx.doi.org/10.1007/s00216-024-05568-3

Banadaki MD; Rummel NG; Backus S; Butterfield DA; St Clair DK; Campbell JM; Zhong W; Mayer K; Berry SM; Chaiswing L, 2024, 'Extraction of redox extracellular vesicles using exclusion-based sample preparation', ANALYTICAL AND BIOANALYTICAL CHEMISTRY, 416, pp. 6317 - 6331, http://dx.doi.org/10.1007/s00216-024-05518-z

Keck JW; Adatorwovor R; Liversedge M; Mijotavich B; Olsson C; Strike WD; Amirsoleimani A; Noble A; Torabi S; Rockward A; Banadaki MD; Smith T; Lacy P; Berry SM, 2024, 'Wastewater Surveillance for Identifying SARS-CoV-2 Infections in Long-Term Care Facilities, Kentucky, USA, 2021-2022', EMERGING INFECTIOUS DISEASES, 30, pp. 530 - 538, http://dx.doi.org/10.3201/eid3003.230888

Antoniou-Kourounioti RL; Meschichi A; Reeck S; Berry S; Menon G; Zhao Y; Fozard J; Holmes T; Zhao L; Wang H; Hartley M; Dean C; Rosa S; Howard M, 2023, 'Integrating analog and digital modes of gene expression at Arabidopsis FLC', Elife, 12, http://dx.doi.org/10.7554/eLife.79743

Spitzer H; Berry S; Donoghoe M; Pelkmans L; Theis FJ, 2023, 'Learning consistent subcellular landmarks to quantify changes in multiplexed protein maps', Nature Methods, 20, pp. 1058 - 1069, http://dx.doi.org/10.1038/s41592-023-01894-z

Torabi S; Amirsoleimani A; Banadaki MD; Strike WD; Rockward A; Noble A; Liversedge M; Keck JW; Berry SM, 2023, 'Stabilization of SARS-CoV-2 RNA in wastewater via rapid RNA extraction', SCIENCE OF THE TOTAL ENVIRONMENT, 878, http://dx.doi.org/10.1016/j.scitotenv.2023.162992

Vijayakumar S; Nittala MR; Buddala V; Mobit P; Duggar WN; Yang CC; Lirette ST; Mundra E; Ahmed HZ; Berry SM; Craft BS; Woods WC; Otts J; Rahimi A; Dobbs T, 2023, 'Real World and Public Health Perspectives of Intraoperative Radiotherapy in Early-Stage Breast Cancer: A Multidisciplinary Analysis Beyond the Statistical Facts', CUREUS JOURNAL OF MEDICAL SCIENCE, 15, http://dx.doi.org/10.7759/cureus.36432

Banadaki MD; Torabi S; Strike WD; Noble A; Keck JW; Berry SM, 2023, 'Improving wastewater-based epidemiology performance through streamlined automation', JOURNAL OF ENVIRONMENTAL CHEMICAL ENGINEERING, 11, http://dx.doi.org/10.1016/j.jece.2023.109595

Ma BL; Rooks CO; Christopher WO; Berry SM, 2023, 'Management of Neuroendocrine Ductal Carcinoma In Situ of the Breast', AMERICAN SURGEON, 89, pp. 3526 - 3527, http://dx.doi.org/10.1177/00031348231161080

Keck JW; Lindner J; Liversedge M; Mijatovic B; Olsson C; Strike W; Noble A; Adatorwovor R; Lacy P; Smith T; Berry SM, 2023, 'Wastewater Surveillance for SARS-CoV-2 at Long-Term Care Facilities: Mixed Methods Evaluation', JMIR PUBLIC HEALTH AND SURVEILLANCE, 9, http://dx.doi.org/10.2196/44657

Keck JW; Berry SM, 2023, 'Wastewater Surveillance-"Messy" Science With Public Health Potential', AMERICAN JOURNAL OF PUBLIC HEALTH, 113, pp. 6 - 8, http://dx.doi.org/10.2105/AJPH.2022.307141

Fakhraldeen SA; Berry SM; Beebe DJ; Alexander CM, 2022, 'Enhanced Ribonucleoprotein Immunoprecipitation (RIP) Technique for the Identification of mRNA Species in Ribonucleoprotein Complexes', BIO-PROTOCOL, 12, http://dx.doi.org/10.21769/BioProtoc.4526

Berry S; Pelkmans L, 2022, 'Mechanisms of cellular mRNA transcript homeostasis', Trends in Cell Biology, 32, pp. 655 - 668, http://dx.doi.org/10.1016/j.tcb.2022.05.003

Berry S; Müller M; Rai A; Pelkmans L, 2022, 'Feedback from nuclear RNA on transcription promotes robust RNA concentration homeostasis in human cells', Cell Systems, 13, pp. 454 - 470.e15, http://dx.doi.org/10.1016/j.cels.2022.04.005

Schehr JL; Sethakorn N; Schultz ZD; Hernandez CI; Bade RM; Eyzaguirre D; Singh A; Niles DJ; Henderson L; Warrick JW; Berry SM; Sundling KE; Beebe DJ; Leal TA; Lang JM, 2022, 'Analytical validation and initial clinical testing of quantitative microscopic evaluation for PD-L1 and HLA I expression on circulating tumor cells from patients with non-small cell lung cancer', BIOMARKER RESEARCH, 10, http://dx.doi.org/10.1186/s40364-022-00370-8

Berry S; Scott J; Ball M; Minichiello V, 2022, 'Deploying nationalist discourses to reduce sex-, gender- and HIV-related stigma in Thailand', BIOSOCIETIES, 17, pp. 676 - 694, http://dx.doi.org/10.1057/s41292-021-00238-4

Fakhraldeen SA; Berry SM; Beebe DJ; Roopra A; Bisbach CM; Spiegelman VS; Niemi NM; Alexander CM, 2022, 'Enhanced immunoprecipitation techniques for the identification of RNA-binding protein partners: IGF2BP1 interactions in mammary epithelial cells', JOURNAL OF BIOLOGICAL CHEMISTRY, 298, http://dx.doi.org/10.1016/j.jbc.2022.101649

Müller M; Avar M; Heinzer D; Emmenegger M; Aguzzi A; Pelkmans L; Berry S, 2021, 'Author Correction: High content genome-wide siRNA screen to investigate the coordination of cell size and RNA production (Scientific Data, (2021), 8, 1, (162), 10.1038/s41597-021-00944-5)', Scientific Data, 8, http://dx.doi.org/10.1038/s41597-021-01096-2

Müller M; Pelkmans L; Berry S, 2021, 'High content genome-wide siRNA screen to investigate the coordination of cell size and RNA production', Scientific Data, 8, pp. 162, http://dx.doi.org/10.1038/s41597-021-00944-5

Barr PJ; Berry SA; Gozansky WS; McQuillan DB; Ross C; Carmichael D; Austin AM; Satterlund TD; Schifferdecker KE; Council L; Dannenberg MD; Wampler AT; Nelson EC; Skinner J, 2020, 'No date for the PROM: the association between patient-reported health events and clinical coding in primary care', JOURNAL OF PATIENT-REPORTED OUTCOMES, 4, http://dx.doi.org/10.1186/s41687-020-0183-5

Juang DS; Berry SM; Li C; Lang JM; Beebe DJ, 2019, 'Centrifugation-Assisted Immiscible Fluid Filtration for Dual-Bioanalyte Extraction', ANALYTICAL CHEMISTRY, 91, pp. 11848 - 11855, http://dx.doi.org/10.1021/acs.analchem.9b02572

Pezzi HM; Guckenberger DJ; Schehr JL; Rothbauer J; Stahlfeld C; Singh A; Horn S; Schultz ZD; Bade RM; Sperger JM; Berry SM; Lang JM; Beebe DJ, 2018, 'Versatile exclusion-based sample preparation platform for integrated rare cell isolation and analyte extraction', LAB ON A CHIP, 18, pp. 3446 - 3458, http://dx.doi.org/10.1039/c8lc00620b

Li C; Yu J; Paine P; Juang DS; Berry SM; Beebe DJ, 2018, 'Double-exclusive liquid repellency (double-ELR): an enabling technology for rare phenotype analysis', LAB ON A CHIP, 18, pp. 2710 - 2719, http://dx.doi.org/10.1039/c8lc00584b

Li C; Yu J; Schehr J; Berry SM; Leal TA; Lang JM; Beebe DJ, 2018, 'Exclusive Liquid Repellency: An Open Multi-Liquid-Phase Technology for Rare Cell Culture and Single-Cell Processing', ACS APPLIED MATERIALS & INTERFACES, 10, pp. 17065 - 17070, http://dx.doi.org/10.1021/acsami.8b03627

Strong AMP; Berry SM; Beebe DJ; Li J-L; Spiegelman VS, 2018, 'miFAST: A novel and rapid microRNA target capture method', MOLECULAR CARCINOGENESIS, 57, pp. 559 - 566, http://dx.doi.org/10.1002/mc.22780

Berry S; Rosa S; Howard M; Bühler M; Dean C, 2017, 'Disruption of an RNA-binding hinge region abolishes LHP1-mediated epigenetic repression', Genes and Development, 31, pp. 2115 - 2120, http://dx.doi.org/10.1101/gad.305227.117

Pezzi HM; Berry SM; Beebe DJ; Striker R, 2017, 'RNA-mediated TILDA for improved cell capacity and enhanced detection of multiply-spliced HIV RNA', INTEGRATIVE BIOLOGY, 9, pp. 876 - 884, http://dx.doi.org/10.1039/c7ib00112f

Yang H; Berry S; Olsson TSG; Hartley M; Howard M; Dean C, 2017, 'Distinct phases of Polycomb silencing to hold epigenetic memory of cold in Arabidopsis', Science, 357, pp. 1142 - 1145, http://dx.doi.org/10.1126/science.aan1121

Berry S; Dean C; Howard M, 2017, 'Slow Chromatin Dynamics Allow Polycomb Target Genes to Filter Fluctuations in Transcription Factor Activity', Cell Systems, 4, pp. 445 - 457.e8, http://dx.doi.org/10.1016/j.cels.2017.02.013

Bennett-Guerrero E; Berry SM; Bergese SD; Fleshner PR; Minkowitz HS; Segura-Vasi AM; Itani KMF; Henderson KW; Rackowski FP; Aberle LH; Stryjewski ME; Corey R; Allenby KS, 2017, 'A randomized, blinded, multicenter trial of a gentamicin vancomycin gel (DFA-02) in patients undergoing abdominal surgery', AMERICAN JOURNAL OF SURGERY, 213, pp. 1003 - 1009, http://dx.doi.org/10.1016/j.amjsurg.2016.10.007

Guckenberger DJ; Pezzi HM; Regier MC; Berry SM; Fawcett K; Barrett K; Beebe DJ, 2016, 'Magnetic System for Automated Manipulation of Paramagnetic Particles', ANALYTICAL CHEMISTRY, 88, pp. 9902 - 9907, http://dx.doi.org/10.1021/acs.analchem.6b02257

Schehr JL; Schultz ZD; Warrick JW; Guckenberger DJ; Pezzi HM; Sperger JM; Heninger E; Saeed A; Leal T; Mattox K; Traynor AM; Campbell TC; Berry SM; Beebe DJ; Lang JM, 2016, 'High Specificity in Circulating Tumor Cell Identification Is Required for Accurate Evaluation of Programmed Death-Ligand 1', PLOS ONE, 11, http://dx.doi.org/10.1371/journal.pone.0159397

Berry SM; Pezzi HM; LaVanway AJ; Guckenberger DJ; Anderson MA; Beebe DJ, 2016, 'AirJump: Using Interfaces to Instantly Perform Simultaneous Extractions', ACS APPLIED MATERIALS & INTERFACES, 8, pp. 15040 - 15045, http://dx.doi.org/10.1021/acsami.6b02555

Hong WS; Pezzi HM; Schuster AR; Berry SM; Sung KE; Beebe DJ, 2016, 'Development of a Highly Sensitive Cell-Based Assay for Detecting Botulinum Neurotoxin Type A through Neural Culture Media Optimization', JOURNAL OF BIOMOLECULAR SCREENING, 21, pp. 65 - 73, http://dx.doi.org/10.1177/1087057115608103

Regier MC; Maccoux LJ; Weinberger EM; Regehr KJ; Berry SM; Beebe DJ; Alarid ET, 2016, 'Transitions from mono- to co- to tri-culture uniquely affect gene expression in breast cancer, stromal, and immune compartments', BIOMEDICAL MICRODEVICES, 18, http://dx.doi.org/10.1007/s10544-016-0083-x

Berry SM; Pezzi HM; Williams ED; Loeb JM; Guckenberger DJ; Lavanway AJ; Puchalski AA; Kityo CM; Mugyenyi PN; Graziano FM; Beebe DJ, 2015, 'Using Exclusion-Based Sample Preparation (ESP) to Reduce Viral Load Assay Cost', PLOS ONE, 10, http://dx.doi.org/10.1371/journal.pone.0143631

Berry S; Dean C, 2015, 'Environmental perception and epigenetic memory: Mechanistic insight through FLC', Plant Journal, 83, pp. 133 - 148, http://dx.doi.org/10.1111/tpj.12869

Berry S; Hartley M; Olsson TSG; Dean C; Howard M, 2015, 'Local chromatin environment of a Polycomb target gene instructs its own epigenetic inheritance', Elife, 4, http://dx.doi.org/10.7554/eLife.07205

Casavant BP; Guckenberger DJ; Beebe DJ; Berry SM, 2014, 'Efficient Sample Preparation from Complex Biological Samples Using a Sliding Lid for Immobilized Droplet Extractions', ANALYTICAL CHEMISTRY, 86, pp. 6355 - 6362, http://dx.doi.org/10.1021/ac500574t

King JD; Berry S; Clarke BR; Morris RJ; Whitfield C, 2014, 'Lipopolysaccharide O antigen size distribution is determined by a chain extension complex of variable stoichiometry in Escherichia coli O9a', Proceedings of the National Academy of Sciences of the United States of America, 111, pp. 6407 - 6412, http://dx.doi.org/10.1073/pnas.1400814111

Berry SM; Chin EN; Jackson SS; Strotman LN; Goel M; Thompson NE; Alexander CM; Miyamoto S; Burgess RR; Beebe DJ, 2014, 'Weak protein-protein interactions revealed by immiscible filtration assisted by surface tension', ANALYTICAL BIOCHEMISTRY, 447, pp. 133 - 140, http://dx.doi.org/10.1016/j.ab.2013.10.038

Guckenberger DJ; Thomas PC; Rothbauer J; LaVanway AJ; Anderson M; Gilson D; Fawcett K; Berto T; Barrett K; Beebe DJ; Berry SM, 2014, 'A Combined Fabrication and Instrumentation Platform for Sample Preparation', JALA, 19, pp. 267 - 274, http://dx.doi.org/10.1177/2211068213518312

Howard AL; Pezzi HM; Beebe DJ; Berry SM, 2014, 'Exclusion-Based Capture and Enumeration of CD4⁺ T Cells from Whole Blood for Low-Resource Settings', JALA, 19, pp. 313 - 321, http://dx.doi.org/10.1177/2211068213509248

Back to profile page