Select Publications

Conference Presentations

Eltahla A; Rodrigo C; Bull R; Luciani F; Lloyd A, 2015, 'Natural prevalence of HCV resistance associated variants in treatment naïve patients across six genotypes', presented at 11th National Scientific Workshop of the Australian Center for HIV and Hepatitis Virology Research, Hunter Valley, Australia

Walker M; Leung P; Eltahla A; Rodrigo C; Luciani F; Foung S; Lloyd A; Bull R, 2015, 'Understanding the timing, breadth and potency of neutralising antibody responses against transmitted/founders', presented at 11th National Scientific Workshop of the Australian Center for HIV and Hepatitis Virology Research, Hunter Valley, Australia

Conference Abstracts

Rouaen JR; Salerno A; Luciani F; Murray J; Shai-Hee T; Tedla N; Haber M; Trahair TN; Vittorio O, 2024, 'Copper chelation overcomes the immunosuppressive neuroblastoma microenvironment to potentiate anti-GD2 antibody therapy', in CANCER RESEARCH, AMER ASSOC CANCER RESEARCH, CA, San Diego, Vol. 84, presented at Annual Meeting of the American-Association-for-Cancer-Research (AACR), CA, San Diego, 05 April 2024 - 10 April 2024, http://dx.doi.org/10.1158/1538-7445.AM2024-2673

Vu VHP; Jue T; Bell J; Luciani F; Michniewicz F; Cirillo G; Vahdat L; Mayoh C; Vittorio O, 2024, 'Unraveling a prognostic and predictive 8-gene signature related to cuproplasia in pan-cancer', in CANCER RESEARCH, AMER ASSOC CANCER RESEARCH, CA, San Diego, Vol. 84, presented at Annual Meeting of the American-Association-for-Cancer-Research (AACR), CA, San Diego, 05 April 2024 - 10 April 2024, http://dx.doi.org/10.1158/1538-7445.AM2024-4942

Louie RY; Samir J; Cai C; McGuire H; Amos T; Fergsuson J; Deveson I; Adikari T; Bonomi M; Bishop D; Mason CE; Balderas R; Ruella M; Singh M; Gottlieb D; Blyth E; Micklethwaite K; Luciani F, 2024, 'Abstract 882: Harnessing single cell multi-omics data to identify predictors of clinical outcome in CD19 CAR T cell therapy', in Cancer Research, American Association for Cancer Research (AACR), Vol. 84, pp. 882 - 882, http://dx.doi.org/10.1158/1538-7445.am2024-882

Singh M; Jackson K; Wang JJ; Schofield P; Field M; Rischmueller M; Luciani F; Gordon T; Goodnow C; Reed J, 2020, 'GENOMIC ANALYSIS OF B CELLS PRODUCING PATHOGENIC RHEUMATOID FACTORS', in INTERNAL MEDICINE JOURNAL, WILEY, Vol. 50, pp. 47 - 47, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000553988700131&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Budzinska MA; Tu T; D'avigdo WMH; Mccaughan GW; Luciani F; Shackel NA, 2016, 'Accumulation of deleterious passenger mutations is associated with the progression of hepatocellular carcinoma', in Plos One, Vol. 11, http://dx.doi.org/10.1371/journal.pone.0162586

Budzinska MA; Tu T; Luciani F; Shackel NA, 2015, 'Deleterious passenger mutations as a marker for progression towards liver cancer', in JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY, WILEY-BLACKWELL, Vol. 30, pp. 4 - 5, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000364505900010&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Preprints

Walker MR; Leung P; Keoshkerian E; Pirozyan MR; Lloyd AR; Luciani F; Bull RA, 2024, Temporal dynamics of viral fitness and the adaptive immune response in HCV infection, http://dx.doi.org/10.1101/2024.09.07.611784

Singh M; Louie RHY; Samir J; Field MA; Milthorpe C; Aldiriki T; Mackie J; Roper E; Faulks M; Jackson KJL; Calcino A; Hardy MY; Blombery P; Amos TG; Deveson IW; Read SA; Shek D; Guerin A; Ma CS; Tangye SG; Sabatino AD; Lenti MV; Pasini A; Ciccocioppo R; Ahlenstiel G; Suan D; Tye-Din JA; Goodnow CC; Luciani F, 2024, Expanded T cell clones with lymphoma driver somatic mutations in refractory celiac disease, http://dx.doi.org/10.1101/2024.03.17.24304320

Young C; Singh M; Jackson KJL; Field MA; Peters TJ; Angioletti-Uberti S; Frenkel D; Ravishankar S; Gupta M; Wang JJ; Agapiou D; Faulks ML; Al-Eryani G; Luciani F; Gordon TP; Reed JH; Danta M; Carr A; Kelleher AD; Dore GJ; Matthews G; Brink R; Bull RA; Suan D; Goodnow CC, 2024, Self-reactive B cells traverse a perfect storm of somatic mutagenesis to cause a virus-induced autoimmune disease, http://dx.doi.org/10.1101/2024.01.07.574561

Ghita L; Yao Z; Xie Y; Duran V; Cagirici HB; Samir J; Osman I; Agudelo Rojas OL; Sanz AM; Sahoo MK; Robinson ML; Gelvez RM; Bueno N; Luciani F; Pinsky BA; Montoya JG; Estupiñan Cardenas MI; Villar Centeno LA; Rojas Garrido EM; Rosso F; Quake SR; Zanini F; Einav S, 2022, Global and cell type-specific immunological hallmarks of severe dengue progression, http://dx.doi.org/10.1101/2022.12.11.519930

Louie R; Cai C; Singh M; Deveson I; Ferguson J; Amos T; McGuire H; Samir J; Gowrishankar K; Adikari T; Balderas R; Bishop D; Gottlieb D; Blyth E; Micklethwaite K; Luciani F, 2022, CAR+ and CAR- T cells differentiate into an NK-like subset that is associated with increased inflammatory cytokines following infusion, http://dx.doi.org/10.21203/rs.3.rs-1495587/v1

Louie RHY; Cai C; Singh M; Deveson I; Ferguson J; Amos T; McGuire HM; Samir J; Gowrishankar K; Adikari T; Balderas R; Bishop D; Gottlieb D; Blyth E; Micklethwaite K; Luciani F, 2022, CAR+ and CAR- T cells differentiate into an NK-like subset that is associated with increased inflammatory cytokines following infusion, http://dx.doi.org/10.1101/2022.03.29.22273013

Tikoo S; Jain R; Martinez B; Song R; Wielscher M; Rizzetto S; Shaw LE; Mitchell AJ; Torres-Pacheco ME; Luciani F; Farlik M; Wong JJL; Jung S; Fraser ST; Weninger W, 2021, A distinct CD115-erythro-myeloid precursor present at the maternal-embryonic interface and in the bone marrow of adult mice, http://dx.doi.org/10.1101/2021.07.24.453629

Cai C; Samir J; Pirozyan M; Adikari T; Gupta M; Leung P; Hughes B; Van der Byl W; Rizzetto S; Elthala A; Keoshkerian E; Palgen J-L; Peters T; Nguyen T; Louie R; Kedzierska K; Gaudieri S; Bull R; Lloyd A; Luciani F, 2021, Single cell multi-omics reveals early elevated function and multiple fates within human progenitor exhausted CD8+ T cells, http://dx.doi.org/10.1101/2021.09.09.459584

Sutton HJ; Aye R; Idris AH; Vistein R; Nduati E; Kai O; Mwacharo J; Li X; Gao X; Andrews TD; Koutsakos M; Nguyen THO; Nekrasov M; Milburn P; Ethala A; Berry AA; Natasha KC; Chakravarty S; Sim BKL; Wheatley AK; Kent SJ; Hoffman SL; Lyke KE; Bejon P; Luciani F; Kedzierska K; Seder RA; Ndungu FM; Cockburn IA, 2020, Atypical B cells are a normal component of immune responses to vaccination and infection in humans, http://dx.doi.org/10.1101/2020.05.28.120808

Samir J; Rizzetto S; Gupta M; Luciani F, 2020, Exploring and analysing single cell multi-omics data with VDJView, http://dx.doi.org/10.21203/rs.2.14949/v4

Samir J; Rizzetto S; Gupta M; Luciani F, 2020, Exploring and analysing single cell multi-omics data with VDJView, http://dx.doi.org/10.21203/rs.2.14949/v3

Bull R; Adikari T; Ferguson J; Hammond J; Stevanovski I; Beukers A; Naing Z; Yeang M; Verich A; Gamaarachchi H; Kim KW; Luciani F; Stelzer-Braid S; Eden J-S; Rawlinson W; van Hal S; Deveson I, 2020, Analytical validity of nanopore sequencing for rapid SARS-CoV-2 genome analysis, http://dx.doi.org/10.1101/2020.08.04.236893

Samir J; Rizzetto S; Gupta M; Luciani F, 2019, Exploring and analysing single cell multi-omics data with VDJView, http://dx.doi.org/10.21203/rs.2.14949/v2

Samir J; Rizzetto S; Gupta M; Luciani F, 2019, Exploring and analysing single cell multi-omics data with VDJView, http://dx.doi.org/10.21203/rs.2.14949/v1

Samir J; Rizzetto S; Gupta M; Luciani F, 2019, Exploring and analysing immune single cell multi-omics data with VDJView, http://dx.doi.org/10.1101/613083

Singh M; Al-Eryani G; Carswell S; Ferguson J; Blackburn J; Barton K; Roden D; Luciani F; Phan T; Junankar S; Jackson K; Goodnow C; Smith M; Swarbrick A, 2018, High-throughput targeted long-read single cell sequencing reveals the clonal and transcriptional landscape of lymphocytes, http://dx.doi.org/10.1101/424945

Rizzetto S; Koppstein DNP; Samir J; Singh M; Reed J; Cai C; Lloyd A; Eltahla A; Goodnow C; Luciani F, 2017, B-cell receptor reconstruction from single-cell RNA-seq with VDJPuzzle, http://dx.doi.org/10.1101/181156

Rizzetto S; Eltahla A; Lin P; Bull R; Lloyd A; Ho J; Venturi V; Luciani F, 2017, Impact of sequencing depth and read length on single cell RNA sequencing data: lessons from T cells, http://dx.doi.org/10.1101/134130


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