Working Papers
Randall KL;  Flesch IEA;  Mei Y;  Miosge LA;  Aye R;  Yu Z;  Domaschenz H;  Hollett NA;  Russell TA;  Stefanovic T;  Wong YC;  Goodnow CC;  Bertram EM;  Enders A;  Tscharke DC, 2023, DOCK2-deficiency causes defects in anti-viral T cell responses and poor control of herpes simplex virus infection., http://dx.doi.org10.1101/2023.08.02.551154, https://www.ncbi.nlm.nih.gov/pubmed/37577614
Preprints
Singh M;  Louie RHY;  Samir J;  Field MA;  Milthorpe C;  Aldiriki T;  Mackie J;  Roper E;  Faulks M;  Jackson KJL;  Calcino A;  Hardy MY;  Blombery P;  Amos TG;  Deveson IW;  Read SA;  Shek D;  Guerin A;  Ma CS;  Tangye SG;  Sabatino AD;  Lenti MV;  Pasini A;  Ciccocioppo R;  Ahlenstiel G;  Suan D;  Tye-Din JA;  Goodnow CC;  Luciani F, 2024, Expanded T cell clones with lymphoma driver somatic mutations in refractory celiac disease, http://dx.doi.org/10.1101/2024.03.17.24304320
Young C;  Singh M;  Jackson KJL;  Field MA;  Peters TJ;  Angioletti-Uberti S;  Frenkel D;  Ravishankar S;  Gupta M;  Wang JJ;  Agapiou D;  Faulks ML;  Al-Eryani G;  Luciani F;  Gordon TP;  Reed JH;  Danta M;  Carr A;  Kelleher AD;  Dore GJ;  Matthews G;  Brink R;  Bull RA;  Suan D;  Goodnow CC, 2024, Self-reactive B cells traverse a perfect storm of somatic mutagenesis to cause a virus-induced autoimmune disease, http://dx.doi.org/10.1101/2024.01.07.574561
Voyer TL;  Gervais A;  Rosain J;  Parent A;  Cederholm A;  Rinchai D;  Bizien L;  Hancioglu G;  Philippot Q;  Gueye MS;  Luxman MR;  Renkilaraj M;  Ogishi M;  Soudée C;  Migaud M;  Rozenberg F;  Momenilandi M;  Riller Q;  Imberti L;  Delmonte O;  Müller G;  Keller B;  Orrego J;  Gallego WA;  Rubin T;  Emiroglu M;  Parvaneh N;  Eriksson D;  Aranda-Guillen M;  Berrios DI;  Vong L;  Katelaris CH;  Mustillo P;  Rädler J;  Bohlen J;  Celik JB;  Astudillo C;  Winter S;  Guichard A;  Béziat V;  Bustamante J;  Pan-Hammarström Q;  Zhang Y;  Rosen LB;  Holland SM;  Kenney H;  Boztuğ K;  Mahlaoui N;  Latour S;  Abraham R;  Lougaris V;  Hauck F;  Sediva A;  Atschekzei F;  Poli MC;  Slatter MA;  Palterer B;  Keller MD;  Pinzon-Charry A;  Sullivan A;  Droney L;  Suan D;  Aladjidi N;  Hie M;  Lazaro E;  Franco J;  Keles S;  Malphette M;  Pasquet M;  Maccari ME;  Meinhardt A;  Ikinciogullari A;  Shahrooei M;  Celmeli F;  Frosk P;  Goodnow CC;  Gray PE;  Belot A;  Kuehn HS;  Rosenzweig SD;  Licciardi F;  Servettaz A;  Barlogis V;  Guenno GL;  Herrmann V-M;  Kuijpers T;  Ducoux G;  Sarrot-Reynauld F;  Schuetz C;  Cunningham-Rundles C;  Rieux-Laucat F;  Tangye SG;  Sobacchi C;  Doffinger R;  Warnatz K;  Grimbacher B;  Fieschi C;  Berteloot L;  Bryant V;  Assant ST;  Notarangelo LD;  Su H;  Neven B;  Abel L;  Zhang Q;  Boisson B;  Cobat A;  Jouanguy E;  Kampe O;  Bastard P;  Roifman C;  Landegren N;  Anderson MS;  Casanova J-L;  Puel A, 2023, Impaired thymic AIRE expression underlies autoantibodies against type I IFNs in humans with inborn errors of the alternative NF-kB pathway, http://dx.doi.org/10.22541/au.167330741.18394805/v1
Al-Eryani G;  Bartonicek N;  Chan C-L;  Anderson A;  Harvey K;  Wu SZ;  Roden D;  Wang T;  Reeves J;  Yeung BZ;  Masle-Farquhar E;  Goodnow CC;  Ma C;  Phan TG;  Lundeberg J;  Junankar S;  Swarbrick A, 2022, Integration of single-cell RNA and protein data identifies novel clinically-relevant lymphocyte phenotypes in breast cancers, http://dx.doi.org/10.1101/2022.05.31.494081
Bryant D;  Smith L;  Rogers-Broadway KR;  Karydis L;  Woo J;  Blunt MD;  Forconi F;  Stevenson FK;  Goodnow C;  Russell A;  Humberg P;  Packham G;  Steele AJ;  Strefford JC, 2022, Network analysis reveals a major role for 14q32 cluster miRNAs in determining transcriptional differences between IGHV-mutated and unmutated CLL, http://dx.doi.org/10.1101/2022.04.26.487675
Masle-Farquhar E;  Jackson KJL;  Peters T;  Al-Eryani G;  Singh M;  Payne K;  Rao G;  Apps G;  Kingham J;  Jara C;  Skvortsova K;  Swarbrick A;  Ma C;  Suan D;  Uzel G;  Chua I;  Leiding J;  Heiskanen K;  Preece K;  Kainulainen L;  O’Sullivan M;  Cooper M;  Seppänen MRJ;  Mustjoki S;  Brothers S;  Vogel T;  Brink R;  Tangye S;  Reed J;  Goodnow C, 2022, STAT3gain-of-function mutations connect leukemia with autoimmune disease by pathological dysregulation of NKG2DhiCD8 killer T cells, http://dx.doi.org/10.1101/2022.02.11.480027
Rouet R;  Henry J;  Johansen M;  Sobti M;  Balachandran H;  Langley D;  Walker G;  Lenthall H;  Jackson J;  Ubiparipovic S;  Mazigi O;  Schofield P;  Burnett D;  Brown S;  Martinello M;  Hudson B;  Gilroy N;  Post J;  Kelleher A;  Jäck H-M;  Goodnow C;  Turville S;  Rawlinson W;  Bull R;  Stewart A;  Hansbro P;  Christ D, 2022, Broadly neutralizing SARS-CoV-2 antibodies through epitope-based selection from convalescent patients, http://dx.doi.org/10.1101/2022.10.19.512954
Zammit N;  Gray P;  Siggs O;  Yap JY;  Russell A;  Cultrone D;  Warren J;  Walters S;  Brink R;  Zahra D;  Burnett D;  Gayevskiy V;  Minoche A;  Ziegler J;  Craig M;  Wong M;  Benitez-Aguirre P;  Teo J;  Cowley M;  Dinger M;  Tangye S;  Burke C;  Phan T;  Goodnow C;  Grey S, 2022, Environmental and genetic disease modifiers of haploinsufficiency of A20, http://dx.doi.org/10.1101/2022.03.19.485004
Ho W-HJ;  Law A;  Masle-Farquhar E;  Castillo L;  Mawson A;  O’Bryan M;  Goodnow C;  Ortega DG;  Oakes S;  Ormandy C, 2021, Activation of the viral sensor oligoadenylate synthetase 2 (Oas2) prevents pregnancy-driven mammary cancer metastases, http://dx.doi.org/10.21203/rs.3.rs-842107/v1
Boast B;  Helian K;  Andrews D;  Li X;  Cho V;  Closa A;  Sutton H;  Reed J;  Bergmann H;  Roots C;  Yabas M;  Barthel N;  Omari S;  Young C;  Miosge L;  Eyras E;  Nutt S;  Hein N;  Hannan K;  Cockburn I;  Goodnow C;  Enders A, 2021, Dysregulation of PAX5 causes uncommitted B cell development and tumorigenesis in mice, http://dx.doi.org/10.1101/2021.01.29.428877
Masle-Farquhar E;  Peters T;  Jackson KJL;  Singh M;  Ma C;  Suan D;  Uzel G;  Chua I;  Leiding J;  Heiskanen K;  Preece K;  Kainulainen L;  O’Sullivan M;  Cooper M;  Seppänen MRJ;  Mustjoki S;  Brothers S;  Vogel T;  Brink R;  Tangye S;  Reed J;  Goodnow C, 2021, Overactive STAT3 drives accumulation of disease-associated CD21lowB cells, http://dx.doi.org/10.1101/2021.12.20.473595
Masle-Farquhar E;  Peters T;  Miosge L;  Parish I;  Weigel C;  Oakes C;  Reed J;  Goodnow C, 2021, Uncontrolled CD21low age-associated and B1 B cell accumulation caused by failure of an EGR2/3 tolerance checkpoint, http://dx.doi.org/10.1101/2021.07.01.450650
Kayagaki N;  Kornfeld O;  Lee B;  Stowe I;  O'Rourke K;  Li Q;  Sandoval W;  Yan D;  Xu M;  Ulas G;  Payandeh J;  Roose-Girma M;  Modrusan Z;  Reja R;  Sagolla M;  Webster J;  Cho V;  Andrews T;  Morris L;  Miosge L;  Goodnow C;  Bertram E;  Dixit V, 2020, NINJ1 mediates plasma membrane rupture during lytic cell death, http://dx.doi.org/10.21203/rs.3.rs-62714/v1
Masle-Farquhar E;  Russell A;  Li Y;  Zhu F;  Rui L;  Brink R;  Goodnow C, 2020, Loss-of-function ofFbxo10, encoding a post-translational regulator of BCL2 in lymphomas, has no discernible effect on BCL2 or B lymphocyte accumulation in mice, http://dx.doi.org/10.1101/2020.08.05.237545
Rouet R;  Mazigi O;  Walker G;  Langley D;  Sobti M;  Schofield P;  Lenthall H;  Jackson J;  Ubiparipovic S;  Henry J;  Abayasingam A;  Burnett D;  Kelleher A;  Brink R;  Bull R;  Turville S;  Stewart A;  Goodnow C;  Rawlinson W;  Christ D, 2020, Potent SARS-CoV-2 binding and neutralization through maturation of iconic SARS-CoV-1 antibodies, http://dx.doi.org/10.1101/2020.12.14.422791
Zammit N;  Siggs OM;  Gray P;  King C;  Christ D;  Goodnow CC;  Grey S;  Cowley M;  Craig M;  Dinger M;  Ziegler J;  Villanueva J;  Cultrone D;  Brink R, 2019, Phospho-tuning immunity through Denisovan, modern human and mouse TNFAIP3 gene variants, http://dx.doi.org/10.1101/589507
Singh M;  Al-Eryani G;  Carswell S;  Ferguson J;  Blackburn J;  Barton K;  Roden D;  Luciani F;  Phan T;  Junankar S;  Jackson K;  Goodnow C;  Smith M;  Swarbrick A, 2018, High-throughput targeted long-read single cell sequencing reveals the clonal and transcriptional landscape of lymphocytes, http://dx.doi.org/10.1101/424945
Rizzetto S;  Koppstein DNP;  Samir J;  Singh M;  Reed J;  Cai C;  Lloyd A;  Eltahla A;  Goodnow C;  Luciani F, 2017, B-cell receptor reconstruction from single-cell RNA-seq with VDJPuzzle, http://dx.doi.org/10.1101/181156
Parish IA;  Stamp LA;  Lorenzo AMD;  Fowler SM;  Sontani Y;  Miosge LA;  Howard DR;  Goodnow CC;  Young HM;  Furness JB, 2016, A novel mutation in the nucleoporin NUP35 causes murine degenerative colonic smooth muscle myopathy, http://dx.doi.org/10.1101/036582
Masle-Farquhar E;  Peters TJ;  Jackson KJL;  Singh M;  Ma CS;  Suan D;  Uzel G;  Chua I;  Leiding JW;  Heiskanen K;  Preece K;  Kainulainen L;  O’Sullivan M;  Cooper MA;  Seppänen MRJ;  Mustjoki S;  Brothers S;  Vogel TP;  Brink R;  Tangye SG;  Reed JH;  Goodnow CC, Overactive STAT3 Drives Accumulation of Disease-Associated CD21 <sup>low</sup> B Cells, http://dx.doi.org/10.2139/ssrn.3996405
Masle-Farquhar E;  Peters TJ;  Miosge LA;  Parish IA;  Weigel C;  Oakes CC;  Reed JH;  Goodnow CC, Uncontrolled CD21 <sup>low</sup> Age-Associated and B1 B Cell Accumulation Caused by Failure of an EGR2/3 Tolerance Checkpoint, http://dx.doi.org/10.2139/ssrn.3885243
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