By Emeritus Professor Andrew Lloyd

Preprints

Maduranga S; Valencia BM; Sigera C; Weeratunga P; Fernando D; Rajapakse S; Rapadas M; Deveson IW; Lloyd AR; Bull R; Rodrigo C, 2025, Between- and within-host mutation of dengue virus, http://dx.doi.org/10.1101/2025.10.12.680595

Moallemi S; Poljak A; Tedla N; Sigera C; Weeratunga P; Fernando D; Rajapakse S; Lloyd A; Rodrigo C, 2025, Early circulating biomarker signatures of dengue-associated plasma leakage uncovered by proteomics, http://dx.doi.org/10.1101/2025.07.03.25330389

Lohmann V; Rothhaar P; Heuss C; Tulessin M; Wang Z; Seong HG-T; Förster C; Quistrebert J; Chai H; Reineke M; Benning L; Honegger J; Hofmann M; Thimme R; Timm J; Cooke G; Schnitzler P; Merle U; Shoukry NH; Bruneau J; Rodrigo C; Lloyd A; Bull R; Ansari A; Mogler C; McLauchlan J; Forns X; Pérez-Del-Pulgar S, 2025, Highly replicating hepatitis C virus variants emerge in immunosuppressed patients causing severe disease., http://dx.doi.org/10.21203/rs.3.rs-6194507/v1

Kabir KMA; Sigera C; Maduranga S; Weeratunga P; Rajapakse S; Fernando D; Lloyd AR; Bull RA; Rodrigo C, 2025, Chikungunya masquerading as dengue infection in Sri Lanka uncovered by metagenomics, http://dx.doi.org/10.1101/2025.05.30.25328620

Walker MR; Leung P; Keoshkerian E; Pirozyan MR; Lloyd AR; Luciani F; Bull RA, 2024, Temporal dynamics of viral fitness and the adaptive immune response in HCV infection, http://dx.doi.org/10.1101/2024.09.07.611784

Adhikari A; Abayasingam A; A NB; Kim HN; Lord M; Agapiou D; Maher L; Rodrigo C; Lloyd A; Bull R; Tedla N, 2023, Characterisation of antibody dependent cellular phagocytosis in patients infected with Hepatitis C virus with different clinical outcomes, http://dx.doi.org/10.22541/au.168992839.95818489/v1

Baird S; Ashley CL; Marsh-Wakefield F; Alca S; Ashhurst TM; Ferguson AL; Lukeman H; Counoupas C; Post JJ; Konecny P; Bartlett A; Martinello M; Bull RA; Lloyd A; Grey A; Hutchings O; Palendira U; Britton WJ; Steain M; Triccas JA, 2023, A unique cytotoxic CD4⁺T cells signature defines critical COVID-19, http://dx.doi.org/10.1101/2023.02.17.23286059

Kwon J; Bretaña N; Kronfli N; Dussault C; Grant L; Galouzis J; Hoey W; Blogg J; Lloyd A; Gray R, 2023, Preparing correctional settings for the next pandemic: a modelling study of COVID-19 outbreaks in two high-income countries, http://dx.doi.org/10.1101/2023.05.08.23289690

Wyller V; Selvakumar J; Havdal L; Drevvatne M; Brodwall E; Berven L; Stiansen-Sonerud T; Einvik G; Leegaard T; Tjade T; Michelsen A; Mollnes T; Lund-Johansen F; Holmøy T; Zetterberg H; Blennow K; Sandler C; Cvejic E; Lloyd A, 2022, Prevalence and predictors of long COVID among non-hospitalised adolescents and young adults: a prospective controlled cohort study, http://dx.doi.org/10.21203/rs.3.rs-2021203/v1

Cai C; Samir J; Pirozyan M; Adikari T; Gupta M; Leung P; Hughes B; Van der Byl W; Rizzetto S; Elthala A; Keoshkerian E; Palgen J-L; Peters T; Nguyen T; Louie R; Kedzierska K; Gaudieri S; Bull R; Lloyd A; Luciani F, 2021, Single cell multi-omics reveals early elevated function and multiple fates within human progenitor exhausted CD8⁺ T cells, http://dx.doi.org/10.1101/2021.09.09.459584

Kwon J; Bretaña N; Grant L; Galouzis J; Hoey W; Blogg J; Lloyd A; Gray R, 2021, The COVID-19 Incarceration Model: a tool for corrections staff to analyze outbreaks of COVID-19, http://dx.doi.org/10.1101/2021.02.18.21252032

Bull R; Abayasingam A; Balachandran H; Agapiou D; Rodrigo C; Keoshkerian E; Li H; Brasher N; Christ D; Rouet R; Burnett D; Grubor-Bauk B; Rawlinson W; Turville S; Aggarwal A; Brilot F; Mina M; Post J; Hudson B; Gilroy N; Dwyer D; Sasson S; Tea F; Pilli D; Tedla N; Lloyd A; Martinello M, 2020, Long-term persistence of neutralizing memory B cells in SARS-CoV-2, http://dx.doi.org/10.21203/rs.3.rs-92527/v1

Rizzetto S; Koppstein DNP; Samir J; Singh M; Reed J; Cai C; Lloyd A; Eltahla A; Goodnow C; Luciani F, 2017, B-cell receptor reconstruction from single-cell RNA-seq with VDJPuzzle, http://dx.doi.org/10.1101/181156

Rizzetto S; Eltahla A; Lin P; Bull R; Lloyd A; Ho J; Venturi V; Luciani F, 2017, Impact of sequencing depth and read length on single cell RNA sequencing data: lessons from T cells, http://dx.doi.org/10.1101/134130

Shih STF; Cheng Q; Carson J; Valerio H; Sheehan Y; Gray RT; Cunningham EB; Kwon J; Lloyd AR; Dore GJ; Wiseman V; Grebely J, Optimizing Point-of-Care Testing Strategies for Diagnosis and Treatment of Hepatitis C Virus Infection in Australia: A Model-Based Cost-Effectiveness Analysis, http://dx.doi.org/10.2139/ssrn.4267510

Shih STF; Cheng Q; Carson J; Valerio H; Sheehan Y; Gray RT; Cunningham EB; Kwon J; Lloyd AR; Dore GJ; Wiseman V; Grebely J, Optimizing Point-of-Care Testing Strategies for Diagnosis and Treatment of Hepatitis C Virus Infection in Australia: A Model-Based Cost-Effectiveness Analysis, http://dx.doi.org/10.2139/ssrn.4267527

Hajarizadeh B; Grebely J; Byrne M; Marks P; Amin J; McManus H; Butler T; Cunningham EB; Vickerman P; Martin NK; McHutchison JG; Brainard DM; Treloar C; Chambers GM; Grant L; Mcgrath C; Lloyd AR; Dore GJ; Group S-CS, Reduced Hepatitis C Incidence Associated with Rapid Treatment Scale-Up in Australian Prisons: Treatment-as-Prevention in the SToP-C Study, http://dx.doi.org/10.2139/ssrn.3709824

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