By Dr Yanming Zhu

Journal articles

Yang W; Wang S; Wu D; Cai T; Zhu Y; Wei S; Zhang Y; Yang X; Tang Z; Li Y, 2025, 'Deep learning model inversion attacks and defenses: a comprehensive survey', Artificial Intelligence Review, 58, http://dx.doi.org/10.1007/s10462-025-11248-0

Tchetchenian A; Zhu Y; Zhang F; O’Donnell LJ; Song Y; Meijering E, 2023, 'A comparison of manual and automated neural architecture search for white matter tract segmentation', Scientific Reports, 13, http://dx.doi.org/10.1038/s41598-023-28210-1

Zhu Y; Yin X; Hu J, 2023, 'FingerGAN: A Constrained Fingerprint Generation Scheme for Latent Fingerprint Enhancement', IEEE Transactions on Pattern Analysis and Machine Intelligence, 45, pp. 8358 - 8371, http://dx.doi.org/10.1109/TPAMI.2023.3236876

Maška M; Ulman V; Delgado-Rodriguez P; Gómez-de-Mariscal E; Nečasová T; Guerrero Peña FA; Ren TI; Meyerowitz EM; Scherr T; Löffler K; Mikut R; Guo T; Wang Y; Allebach JP; Bao R; Al-Shakarji NM; Rahmon G; Toubal IE; Palaniappan K; Lux F; Matula P; Sugawara K; Magnusson KEG; Aho L; Cohen AR; Arbelle A; Ben-Haim T; Raviv TR; Isensee F; Jäger PF; Maier-Hein KH; Zhu Y; Ederra C; Urbiola A; Meijering E; Cunha A; Muñoz-Barrutia A; Kozubek M; Ortiz-de-Solórzano C, 2023, 'The Cell Tracking Challenge: 10 years of objective benchmarking', Nature Methods, 20, pp. 1010 - 1020, http://dx.doi.org/10.1038/s41592-023-01879-y

Zhu Y; Yin X; Meijering E, 2023, 'A Compound Loss Function With Shape Aware Weight Map for Microscopy Cell Segmentation', IEEE Transactions on Medical Imaging, 42, pp. 1278 - 1288, http://dx.doi.org/10.1109/TMI.2022.3226226

Yin X; Wang S; Zhu Y; Hu J, 2023, 'A Novel Length-Flexible Lightweight Cancelable Fingerprint Template for Privacy-Preserving Authentication Systems in Resource-Constrained IoT Applications', IEEE Internet of Things Journal, 10, pp. 877 - 892, http://dx.doi.org/10.1109/JIOT.2022.3204246

Zhu Y; Wang M; Yin X; Zhang J; Meijering E; Hu J, 2023, 'Deep Learning in Diverse Intelligent Sensor Based Systems', Sensors, 23, pp. 62, http://dx.doi.org/10.3390/s23010062

Yin X; Zhu Y; Hu J, 2022, 'A Comprehensive Survey of Privacy-preserving Federated Learning: A Taxonomy, Review, and Future Directions', ACM Computing Surveys, 54, http://dx.doi.org/10.1145/3460427

Wang M; Yin X; Zhu Y; Hu J, 2022, 'Representation Learning and Pattern Recognition in Cognitive Biometrics: A Survey', Sensors, 22, pp. 5111, http://dx.doi.org/10.3390/s22145111

Yin X; Zhu Y; Hu J, 2022, 'A Subgrid-Oriented Privacy-Preserving Microservice Framework Based on Deep Neural Network for False Data Injection Attack Detection in Smart Grids', IEEE Transactions on Industrial Informatics, 18, pp. 1957 - 1967, http://dx.doi.org/10.1109/TII.2021.3102332

Yin X; Zhu Y; Xie Y; Hu J, 2022, 'PowerFDNet: Deep Learning-Based Stealthy False Data Injection Attack Detection for AC-Model Transmission Systems', IEEE Open Journal of the Computer Society, 3, pp. 149 - 161, http://dx.doi.org/10.1109/OJCS.2022.3199755

Zhu Y; Meijering E, 2021, 'Automatic improvement of deep learning-based cell segmentation in time-lapse microscopy by neural architecture search', Bioinformatics, 37, pp. 4844 - 4850, http://dx.doi.org/10.1093/bioinformatics/btab556

Yin X; Zhu Y; Hu J, 2021, '3D Fingerprint Recognition based on Ridge-Valley-Guided 3D Reconstruction and 3D Topology Polymer Feature Extraction', IEEE Transactions on Pattern Analysis and Machine Intelligence, 43, pp. 1085 - 1091, http://dx.doi.org/10.1109/tpami.2019.2949299

Yin X; Zhu Y; Hu J, 2021, 'A Survey on 2D and 3D Contactless Fingerprint Biometrics: A Taxonomy, Review, and Future Directions', IEEE Open Journal of the Computer Society, 2, pp. 370 - 381, http://dx.doi.org/10.1109/OJCS.2021.3119572

Yin X; Zhu Y; Hu J, 2020, 'Contactless Fingerprint Recognition Based on Global Minutia Topology and Loose Genetic Algorithm', IEEE Transactions on Information Forensics and Security, 15, pp. 28 - 41, http://dx.doi.org/10.1109/TIFS.2019.2918083

Li K; Zhu Y; Yang J; Jiang J, 2016, 'Video super-resolution using an adaptive superpixel-guided auto-regressive model', Pattern Recognition, 51, pp. 59 - 71, http://dx.doi.org/10.1016/j.patcog.2015.08.008

Zhu Y; Li K; Jiang J, 2014, 'Video super-resolution based on automatic key-frame selection and feature-guided variational optical flow', Signal Processing Image Communication, 29, pp. 875 - 886, http://dx.doi.org/10.1016/j.image.2014.06.005

Luo X; Sun X; Liu B; Zhu D; Bai X; Cai H; Ji W; Cao L; Wu J; Wang M; Ding X; Zhu Y, 2013, 'Ectopic Expression of a WRKY Homolog from Glycine soja Alters Flowering Time in Arabidopsis', PLOS ONE, 8, http://dx.doi.org/10.1371/journal.pone.0073295

Sun X; Ji W; Ding X; Bai X; Cai H; Yang S; Qian X; Sun M; Zhu Y, 2013, 'GsVAMP72, a novel Glycine soja R-SNARE protein, is involved in regulating plant salt tolerance and ABA sensitivity', PLANT CELL TISSUE AND ORGAN CULTURE, 113, pp. 199 - 215, http://dx.doi.org/10.1007/s11240-012-0260-4

Sun X; Sun M; Luo X; Ding X; Ji W; Cai H; Bai X; Liu X; Zhu Y, 2013, 'A Glycine soja ABA-responsive receptor-like cytoplasmic kinase, GsRLCK, positively controls plant tolerance to salt and drought stresses', PLANTA, 237, pp. 1527 - 1545, http://dx.doi.org/10.1007/s00425-013-1864-6

Luo X; Bai X; Sun X; Zhu D; Liu B; Ji W; Cai H; Cao L; Wu J; Hu M; Liu X; Tang L; Zhu Y, 2013, 'Expression of wild soybean WRKY20 in Arabidopsis enhances drought tolerance and regulates ABA signalling', JOURNAL OF EXPERIMENTAL BOTANY, 64, pp. 2155 - 2169, http://dx.doi.org/10.1093/jxb/ert073

Zhu D; Bai X; Luo X; Chen Q; Cai H; Ji W; Zhu Y, 2013, 'Identification of wild soybean (Glycine soja) TIFY family genes and their expression profiling analysis under bicarbonate stress', PLANT CELL REPORTS, 32, pp. 263 - 272, http://dx.doi.org/10.1007/s00299-012-1360-7

Bai X; Liu J; Tang L; Cai H; Chen M; Ji W; Liu Y; Zhu Y, 2013, 'Overexpression of GsCBRLK from Glycine soja enhances tolerance to salt stress in transgenic alfalfa (Medicago sativa)', FUNCTIONAL PLANT BIOLOGY, 40, pp. 1048 - 1056, http://dx.doi.org/10.1071/FP12377

Tang L; Cai H; Ji W; Luo X; Wang Z; Wu J; Wang X; Cui L; Wang Y; Zhu Y; Bai X, 2013, 'Overexpression of GsZFP1 enhances salt and drought tolerance in transgenic alfalfa (Medicago sativa L.)', PLANT PHYSIOLOGY AND BIOCHEMISTRY, 71, pp. 22 - 30, http://dx.doi.org/10.1016/j.plaphy.2013.06.024

Zhu D; Cai H; Luo X; Bai X; Deyholos MK; Chen Q; Chen C; Ji W; Zhu Y, 2012, 'Over-expression of a novel JAZ family gene from Glycine soja, increases salt and alkali stress tolerance', BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 426, pp. 273 - 279, http://dx.doi.org/10.1016/j.bbrc.2012.08.086

Luo X; Cui N; Zhu Y; Cao L; Zhai H; Cai H; Ji W; Wang X; Zhu D; Li Y; Bai X, 2012, 'Over-expression of GsZFP1, an ABA-responsive C2H2-type zinc finger protein lacking a QALGGH motif, reduces ABA sensitivity and decreases stomata size', Journal of Plant Physiology, 169, pp. 1192 - 1202, http://dx.doi.org/10.1016/j.jplph.2012.03.019

Liu X; Zhu Y; Zhai H; Cai H; Ji W; Luo X; Li J; Bai X, 2012, 'AtPP2CG1, a protein phosphatase 2C, positively regulates salt tolerance of Arabidopsis in abscisic acid-dependent manner', BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 422, pp. 710 - 715, http://dx.doi.org/10.1016/j.bbrc.2012.05.064

Luo X; Bai X; Zhu D; Li Y; Ji W; Cai H; Wu J; Liu B; Zhu Y, 2012, 'GsZFP1, a new Cys2/His2-type zinc-finger protein, is a positive regulator of plant tolerance to cold and drought stress', Planta, 235, pp. 1141 - 1155, http://dx.doi.org/10.1007/s00425-011-1563-0

Sun X; Li Y; Cai H; Bai X; Ji W; Ding X; Zhu Y, 2012, 'The Arabidopsis AtbZIP1 transcription factor is a positive regulator of plant tolerance to salt, osmotic and drought stresses', Journal of Plant Research, 125, pp. 429 - 438, http://dx.doi.org/10.1007/s10265-011-0448-4

Yang L; Ji W; Gao P; Li Y; Cai H; Bai X; Chen Q; Zhu Y, 2012, 'GsAPK, an ABA-Activated and Calcium-Independent SnRK2-Type Kinase from G. soja, Mediates the Regulation of Plant Tolerance to Salinity and ABA Stress', PLOS ONE, 7, http://dx.doi.org/10.1371/journal.pone.0033838

Zhu D; Bai X; Chen C; Chen Q; Cai H; Li Y; Ji W; Zhai H; Lv D; Luo X; Zhu Y, 2011, 'GsTIFY10, a novel positive regulator of plant tolerance to bicarbonate stress and a repressor of jasmonate signaling', Plant Molecular Biology, 77, pp. 285 - 297, http://dx.doi.org/10.1007/s11103-011-9810-0

Shu Y; Li Y; Zhu Z; Bai X; Cai H; Ji W; Guo D; Zhu Y, 2011, 'SNPs discovery and CAPS marker conversion in soybean', Molecular Biology Reports, 38, pp. 1841 - 1846, http://dx.doi.org/10.1007/s11033-010-0300-2

Gao P; Bai X; Yang L; Lv D; Pan X; Li Y; Cai H; Ji W; Chen Q; Zhu Y, 2011, 'Osa-MIR393: A salinity- and alkaline stress-related microRNA gene', Molecular Biology Reports, 38, pp. 237 - 242, http://dx.doi.org/10.1007/s11033-010-0100-8

Li Y; Liu L; Bai X; Cai H; Ji W; Guo D; Zhu Y, 2010, 'Comparative study of discretization methods of microarray data for inferring transcriptional regulatory networks', BMC Bioinformatics, 11, http://dx.doi.org/10.1186/1471-2105-11-520

Yang L; Ji W; Zhu Y; Gao P; Li Y; Cai H; Bai X; Guo D, 2010, 'GsCBRLK, a calcium/calmodulin-binding receptor-like kinase, is a positive regulator of plant tolerance to salt and ABA stress', Journal of Experimental Botany, 61, pp. 2519 - 2533, http://dx.doi.org/10.1093/jxb/erq084

Zhai H; Bai X; Zhu Y; Li Y; Cai H; Ji W; Ji Z; Liu X; Liu X; Li J, 2010, 'A single-repeat R3-MYB transcription factor MYBC1 negatively regulates freezing tolerance in Arabidopsis', Biochemical and Biophysical Research Communications, 394, pp. 1018 - 1023, http://dx.doi.org/10.1016/j.bbrc.2010.03.114

Ji W; Zhu Y; Li Y; Yang L; Zhao X; Cai H; Bai X, 2010, 'Over-expression of a glutathione S-transferase gene, GsGST, from wild soybean (Glycine soja) enhances drought and salt tolerance in transgenic tobacco', Biotechnology Letters, 32, pp. 1173 - 1179, http://dx.doi.org/10.1007/s10529-010-0269-x

Gao P; Bai X; Yang L; Lv D; Li Y; Cai H; Ji W; Guo D; Zhu Y, 2010, 'Over-expression of osa-MIR396c decreases salt and alkali stress tolerance', Planta, 231, pp. 991 - 1001, http://dx.doi.org/10.1007/s00425-010-1104-2

Shu Y; Li Y; Zhu Y; Zhu Z; Lv D; Bai X; Cai H; Ji W; Guo D, 2010, 'Genome-wide identification of intron fragment insertion mutations and their potential use as SCAR molecular markers in the soybean', Theoretical and Applied Genetics, 121, pp. 1 - 8, http://dx.doi.org/10.1007/s00122-010-1285-x

Li Y; Zhu Y; Bai X; Cai H; Ji W; Guo D, 2009, 'ReTRN: A retriever of real transcriptional regulatory network and expression data for evaluating structure learning algorithm', Genomics, 94, pp. 349 - 354, http://dx.doi.org/10.1016/j.ygeno.2009.08.009

Li Y; Zhu Y; Liu Y; Shu Y; Meng F; Lu Y; Bai X; Liu B; Guo D, 2008, 'Genome-wide identification of osmotic stress response gene in Arabidopsis thaliana', Genomics, 92, pp. 488 - 493, http://dx.doi.org/10.1016/j.ygeno.2008.08.011

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