By Dr Simon Ghaly

Journal articles

Williams AJ; Paramsothy R; Wu N; Ghaly S; Leach S; Paramsothy S; Corte C; O'Brien C; Burke C; Wark G; Samocha-Bonet D; Lambert K; Ahlenstiel G; Wasinger V; Dutt S; Pavli P; Grimm M; Lemberg D; Connor S; Leong R; Hold G, 2021, 'Australia IBD Microbiome (AIM) Study: Protocol for a multicentre longitudinal prospective cohort study', BMJ Open, 11, http://dx.doi.org/10.1136/bmjopen-2020-042493

Haifer C; Srinivasan A; An YK; Picardo S; van Langenberg D; Menon S; Begun J; Ghaly S; Thin L, 2021, 'Switching Australian patients with moderate to severe inflammatory bowel disease from originator to biosimilar infliximab: a multicentre, parallel cohort study', Medical Journal of Australia, 214, pp. 128 - 133, http://dx.doi.org/10.5694/mja2.50824

Wark G; Samocha-Bonet D; Ghaly S; Danta M, 2021, 'The role of diet in the pathogenesis and management of inflammatory bowel disease: A review', Nutrients, 13, pp. 1 - 26, http://dx.doi.org/10.3390/nu13010135

Haifer C; Saikal A; Paramsothy S; Borody TJ; Ghaly DS; Kaakoush NO; Leong RW, 2021, '680 LYOPHILIZED ORALLY ADMINISTERED FECAL MICROBIOTA TRANSPLANTATION IN THE MANAGEMENT OF ULCERATIVE COLITIS (LOTUS STUDY) – RESULTS FROM THE INDUCTION PHASE OF A RANDOMIZED CONTROLLED TRIAL', Gastroenterology, 160, pp. S - 135, http://dx.doi.org/10.1016/s0016-5085(21)01074-x

Prentice RE; Rentsch C; Al-Ani AH; Zhang E; Johnson D; Halliday J; Bryant R; Begun J; Ward MG; Lewindon PJ; Connor SJ; Ghaly S; Christensen B, 2021, 'SARS-CoV-2 vaccination in patients with inflammatory bowel disease.', GastroHep, 3, pp. 212 - 228, http://dx.doi.org/10.1002/ygh2.473

Reddy Pulusu SS; Srinivasan A; Krishnaprasad K; Cheng D; Begun J; Keung C; Van Langenberg D; Thin L; Mogilevski T; de Cruz P; Radford-Smith G; Flanagan E; Bell S; Kashkooli S; Sparrow M; Ghaly S; Bampton P; Sawyer E; Connor S; Rizvi QUA; Andrews JM; Mahy G; Chivers P; Travis S; CraigLawrance I, 2020, 'Vedolizumab for ulcerative colitis: Real world outcomes from a multicenter observational cohort of Australia and Oxford', World Journal of Gastroenterology, 26, pp. 4428 - 4441, http://dx.doi.org/10.3748/WJG.V26.I30.4428

McGrath-Cadell L; Bart NK; Lin L; Ghaly S; Holloway CJ, 2020, 'Myocarditis in Crohn's disease: A case report', European Heart Journal Case Reports, 4, pp. 1 - 6, http://dx.doi.org/10.1093/ehjcr/ytaa120

Aysha AA; Rentsch C; Prentice R; Johnson D; Bryant RV; Ward MG; Costello SP; Lewindon P; Ghaly S; Connor SJ; Begun J; Christensen B, 2020, 'Practical management of inflammatory bowel disease patients during the COVID-19 pandemic: expert commentary from the Gastroenterological Society of Australia Inflammatory Bowel Disease faculty', Internal Medicine Journal, 50, pp. 798 - 804, http://dx.doi.org/10.1111/imj.14889

Haifer C; Kelly CR; Paramsothy S; Andresen D; Papanicolas LE; McKew GL; Borody TJ; Kamm M; Costello SP; Andrews JM; Begun J; Chan HT; Connor S; Ghaly S; Johnson PDR; Lemberg DA; Paramsothy R; Redmond A; Sheorey H; Van Der Poorten D; Leong RW, 2020, 'Australian consensus statements for the regulation, production and use of faecal microbiota transplantation in clinical practice', Gut, 69, pp. 801 - 810, http://dx.doi.org/10.1136/gutjnl-2019-320260

Wu Y; Ghaly S; Kerr S; Jackson B; Hanigan K; Martins D; Krishnaprasad K; Mountifield RE; Whiteman DC; Bampton PA; Gearry RB; Radford-Smith GL; Lawrance IC, 2020, 'Level of UV Exposure, Skin Type, and Age Are More Important than Thiopurine Use for Keratinocyte Carcinoma Development in IBD Patients', Digestive Diseases and Sciences, 65, pp. 1172 - 1179, http://dx.doi.org/10.1007/s10620-019-05818-w

Ghaly S; Kaakoush NO; Hart PH, 2020, 'Effects of UVR exposure on the gut microbiota of mice and humans', Photochemical and Photobiological Sciences, 19, pp. 20 - 28, http://dx.doi.org/10.1039/c9pp00443b

Iliff J; Bart NK; Ghaly S; Granger E; Holloway CJ, 2019, 'Pericardial Mesothelioma in a 35-Year-Old Male With Ulcerative Colitis', Circulation Cardiovascular Imaging, 12, pp. e008659, http://dx.doi.org/10.1161/CIRCIMAGING.118.008659

Ghaly S; Hart PH; Lawrance IC, 2019, 'Inflammatory bowel diseases: interrelationships between dietary vitamin D, exposure to UV radiation and the fecal microbiome', Expert Review of Gastroenterology and Hepatology, 13, pp. 1039 - 1048, http://dx.doi.org/10.1080/17474124.2019.1685874

Haifer C; Lawrance IC; Center JR; Clarke MW; Hart PH; Eisman JA; Lucas R; Ghaly S, 2019, 'Vitamin D metabolites are lower with active Crohn’s disease and spontaneously recover with development of remission', Therapeutic Advances in Gastroenterology, 12, http://dx.doi.org/10.1177/1756284819865144

Ghaly S; Kaakoush NO; Lloyd F; McGonigle T; Mok D; Baird A; Klopcic B; Gordon L; Gorman S; Forest C; Bouillon R; Lawrance IC; Hart PH, 2018, 'High Dose Vitamin D supplementation alters faecal microbiome and predisposes mice to more severe colitis', Scientific Reports, 8, http://dx.doi.org/10.1038/s41598-018-29759-y

Flanagan E; Gibson PR; Begun J; Ghaly S; Garg M; Andrews JM; Rosella O; Rosella G; Bell SJ, 2018, 'Letter: vedolizumab drug concentrations in neonates following intrauterine exposure', Alimentary Pharmacology and Therapeutics, 48, pp. 1328 - 1330, http://dx.doi.org/10.1111/apt.15027

Ghaly S; Bliuc D; Center JR; Clarke MW; Jones AP; Trend S; Kermode AG; Neale RE; Hart PH, 2018, 'Vitamin D C3-epimer levels are proportionally higher with oral vitamin D supplementation compared to ultraviolet irradiation of skin in mice but not humans.', The Journal of Steroid Biochemistry and Molecular Biology, 186, pp. 110 - 116, http://dx.doi.org/10.1016/j.jsbmb.2018.10.002

Ghaly S, 2018, 'What is in our treasure chest? Australian pharmaceutical benefits scheme availability and criteria for prescribing biologics', Journal of Gastroenterology and Hepatology Australia, 33, pp. 12 - 13, http://dx.doi.org/10.1111/jgh.14420

Ghaly S; Kaakoush NO; Lloyd F; Gordon L; Forest C; Lawrance IC; Hart PH, 2018, 'Ultraviolet irradiation of skin alters the faecal microbiome independently of vitamin D in mice', Nutrients, 10, http://dx.doi.org/10.3390/nu10081069

Haifer C; Lucas RM; Clarke MW; Lawrance I; Hart PH; Center JR; Eisman JA; Ghaly S, 2018, 'P120 Vitamin D deficiency in Crohn’s disease', Journal of Crohn's and Colitis, 12, pp. S152 - S153, http://dx.doi.org/10.1093/ecco-jcc/jjx180.247

Pulusu SSR; Srinivasan A; Krishnaprasad K; Cheng D; Mogilevski T; Flanagan E; Keung C; Wu C; Prosser R; Sawyer E; Rizvi Q-U-A; Su H; Leung W-K; Edmundson A; Cooke S; Mahy G; Thin L; Radford-Smith G; Sparrow M; Andrews JM; Connor S; Bampton P; Ghaly S; Van Langenberg D; Bell S; De Cruz P; Begun J; Ng S; Travis S; Lawrance I, 2018, 'P571 Vedolizumab (VDZ) real-world outcomes in ulcerative colitis (UC)', Journal of Crohn's and Colitis, 12, pp. S395 - S396, http://dx.doi.org/10.1093/ecco-jcc/jjx180.698

Mitrev N; Vande Casteele N; Seow CH; Andrews JM; Connor SJ; Moore GT; Barclay M; Begun J; Bryant R; Chan W; Corte C; Ghaly S; Lemberg DA; Kariyawasam V; Lewindon P; Martin J; Mountifield R; Radford-Smith G; Slobodian P; Sparrow M; Toong C; van Langenberg D; Ward MG; Leong RW, 2017, 'Review article: consensus statements on therapeutic drug monitoring of anti-tumour necrosis factor therapy in inflammatory bowel diseases', Alimentary Pharmacology and Therapeutics, 46, pp. 1037 - 1053, http://dx.doi.org/10.1111/apt.14368

Wu Y; Ghaly S; Kerr S; Krishnaprasad K; Prosser R; Jackson B; Hanigan K; Martins D; Mountifield R; Whiteman D; Bampton P; Gearry R; Radford-Smith G; Lawrance IC, 2017, 'P691 UV exposure and skin type are more important than thiopurine exposure for non-melanoma skin cancer risk in IBD', Journal of Crohn's and Colitis, 11, pp. S433 - S434, http://dx.doi.org/10.1093/ecco-jcc/jjx002.815

Wu Y; Ghaly S; Kerr S; Krishnaprasad K; Martins D; Jackson B; Prosser R; Hanigan K; Mountifield RE; Whiteman D; Bampton PA; Gearry R; Radford-Smith GL; Lawrance I, 2017, 'UV Exposure and Skin Type are More Important than Thiopurine Exposure for Non-Melanoma Skin Cancer Risk in IBD', Gastroenterology, 152, pp. S576 - S576, http://dx.doi.org/10.1016/s0016-5085(17)32082-6

McGonigle TA; Keane KN; Ghaly S; Carter KW; Anderson D; Scott NM; Goodridge HS; Dwyer A; Greenland E; Pixley FJ; Newsholme P; Hart PH, 2017, 'UV Irradiation of Skin Enhances Glycolytic Flux and Reduces Migration Capabilities in Bone Marrow-Differentiated Dendritic Cells.', Am J Pathol, 187, pp. 2046 - 2059, http://dx.doi.org/10.1016/j.ajpath.2017.06.003

Andrews JM; Costello SP; Agarwal AK; Bampton P; Beswick L; Connor S; Ghaly S; O'Connor S; Pudipeddi A; Sechi A; Sparrow M; Walsh AJ, 2016, 'Conflict of interest: Real and perceived - a more mature consideration is needed', Internal Medicine Journal, 46, pp. 377 - 379, http://dx.doi.org/10.1111/imj.12989

Ghaly S; Murray K; Baird A; Martin K; Prosser R; Mill J; Simms LA; Hart PH; Radford-Smith G; Bampton PA; Lawrance IC, 2016, 'High Vitamin D-Binding Protein Concentration, Low Albumin, and Mode of Remission Predict Relapse in Crohn's Disease.', Inflamm Bowel Dis, 22, pp. 2456 - 2464, http://dx.doi.org/10.1097/MIB.0000000000000894

Costello SP; Ghaly S; Beswick L; Pudipeddi A; Agarwal A; Sechi A; O'Connor S; Connor SJ; Sparrow MP; Bampton P; Walsh AJ; Andrews JM, 2015, 'Compassionate access anti-tumour necrosis factor-α therapy for ulcerative colitis in Australia: The benefits to patients', Internal Medicine Journal, 45, pp. 659 - 666, http://dx.doi.org/10.1111/imj.12732

Ghaly S; Costello S; Beswick L; Pudipeddi A; Agarwal A; Sechi A; Antoniades S; Headon B; Connor S; Lawrance IC; Sparrow M; Walsh AJ; Andrews JM, 2015, 'Dose tailoring of anti-tumour necrosis factor-alpha therapy delivers useful clinical efficacy in Crohn disease patients experiencing loss of response', Internal Medicine Journal, 45, pp. 170 - 177, http://dx.doi.org/10.1111/imj.12621

Ghaly S; Martin K; Prosser R; Mill J; Simms LA; Murray K; Radford-Smith GL; Bampton PA; Lawrance IC, 2015, 'Su1268 Serum Vitamin D Binding Protein Concentration Is Associated With Disease Flare in a Cohort of Patients in Crohn's Disease Remission', Gastroenterology, 148, pp. S - 456, http://dx.doi.org/10.1016/s0016-5085(15)31539-0

Ghaly S; Costello S; Beswick L; Pudipeddi A; Agarwal A; Sechi A; Headon B; Prosser R; Connor S; Lawrance IC; Sparrow M; Bampton P; Walsh A; Andrews J, 2014, 'Short term dose tailoring of anti TNF-alpha therapy delivers useful clinical efficacy in Crohn's disease patients with secondary loss of response', JOURNAL OF CROHNS & COLITIS, 8, pp. S209 - S209, http://dx.doi.org/10.1016/S1873-9946(14)60466-9

Ghaly S; Lawrance I, 2014, 'The role of vitamin D in gastrointestinal inflammation.', Expert Rev Gastroenterol Hepatol, 8, pp. 909 - 923, http://dx.doi.org/10.1586/17474124.2014.925796

Ghaly S; Lourenco R; Abbott J, 2008, 'Audit of endometrial biopsy at outpatient hysteroscopy', Australian and New Zealand Journal of Obstetrics and Gynaecology, 48, pp. 202 - 206, http://dx.doi.org/10.1111/j.1479-828X.2008.00834.x

Conference Papers

Greveson K; Inglis C; Ben-Horin S; Ghaly S; Yunki Y; Leong R, 2019, 'Multinational comparisons of practices in overseas travel in Crohn's disease and ulcerative colitis', in JOURNAL OF CROHNS & COLITIS, OXFORD UNIV PRESS, Copenhagen, Denmark, pp. S267 - S267, presented at ECCO, Copenhagen, Denmark, 06 March 2019 - 09 March 2019, http://dx.doi.org/10.1093/ecco-jcc/jjy222.456

Wu Y; Ghaly S; Kerr S; Krishnaprasad K; Prosser R; Jackson B; Hanigan K; Martins D; Mountifield R; Whiteman D; Bampton P; Gearry R; Radford-Smith G; Lawrance IC, 2017, 'UV exposure and skin type are more important than thiopurine exposure for non-melanoma skin cancer risk in IBD', in JOURNAL OF CROHNS & COLITIS, OXFORD UNIV PRESS, pp. S433 - S434

Costello S; Ghaly S; O'Connor S; Agarwal A; Beswick L; Headon B; Pudipeddi A; Sechi A; Prosser R; Connor S; Sparrow M; Bampton P; Walsh A; Andrews J, 2014, 'Compassionate access use of anti-TNF therapy in ulcerative colitis in six Australian IBD centres has been beneficial to patient outcomes', in JOURNAL OF CROHNS & COLITIS, OXFORD UNIV PRESS, pp. S288 - S288, http://dx.doi.org/10.1016/S1873-9946(14)60649-8

Ghaly S; Gill RS; Keegan MJ; Angus PW; George J; Nicoll AJ; Law M; Sinclair M; Lim LY; Ratnayake H; Dunn A; Strasser SI; Zekry A, 2012, 'Hepatocellular Carcinoma Risk In Chronic Hepatitis B Patients Achieving Viral Suppression With Antiviral Therapy', in HEPATOLOGY, WILEY-BLACKWELL, MA, Boston, pp. 354A - 354A, presented at 63rd Annual Meeting of the American-Association-for-the-Study-of-Liver-Diseases (AASLD), MA, Boston, 09 November 2012 - 13 November 2012, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000310955601331&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Conference Posters

GU B; Venkatesh K; Williams AJ; Ng W; Corte C; Ghaly S; Xuan W; Paramsothy S; Connor S, 2020, 'P586 Higher infliximab and adalimumab trough levels are associated with fistula healing in patients with fistulising perianal Crohn’s disease', Vol. 14, pp. S490 - S491, http://dx.doi.org/10.1093/ecco-jcc/jjz203.714

Conference Abstracts

Su WK; Mcnamara J; Pipicella J; Wilson W; Ghaly S; Cabaero AG; Walker G; Forbes A; Su H; Brett L; Dutt S; An Y-K; Lawrance I; Lynch K; Andrews J; Connor SJ, 2024, 'Documented variation in inflammatory bowel disease care in Australasia : Crohn's Colitis Cure (CCC) data insights program', in JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY, WILEY, Vol. 39, pp. 183 - 184

Little R; Jayawardana T; Zhang F; Koentgen S; Wu N; Tavakoli P; Chung A; Ho A; Boussioutas A; Ward M; Sparrow MP; Gibson P; Ghaly S; Corte C; Talley NJ; Leach S; Lemberg D; Dutt S; Paramsothy S; Leong R; Connor SJ; Hold G, 2024, 'Gut microbiota are associated with disease activity in patients with Crohn's disease and ulcerative colitis: baseline sequencing from the Australian IBD Microbiome study', in JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY, WILEY, Vol. 39, pp. 234 - 234

Cosier D; Charlton K; Lambert K; Alvesneri JS; Batterham M; Koentgen S; Wu N; Tavakoli P; Chung A; Ho A; Ghaly S; Connor SJ; Leong R; Talley NJ; Leach S; Lemberg D; Dutt S; Hold G, 2024, 'Healthier dietary intake is positively associated with disease activity and inflammation in Australian adults with inflammatory bowel disease', in JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY, WILEY, Vol. 39, pp. 319 - 319

Jayawardana T; Little R; Zhang F; Koentgen S; Wu N; Tavakoli P; Chung A; Ho A; Boussioutas A; Ward M; Sparrow MP; Gibson P; Ghaly S; Corte C; Talley NJ; Leach S; Dutt S; Lemberg A; Paramsothy S; Connor SJ; Leong R; Hold G, 2024, 'Impaired health-related quality of life is associated with alterations in gut microbiota in patients with inflammatory bowel disease: baseline sequencing from the Australian IBD Microbiome study', in JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY, WILEY, Vol. 39, pp. 217 - 218

Sin HCL; Baraty B; Li V; Ghaly S; Haifer C, 2024, 'Intestinal ultrasound in immune checkpoint inhibitor-related colitis', in JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY, WILEY, Vol. 39, pp. 214 - 215

Houshyar Y; Zhang F; Wu N; Tavakoli P; Grimm MC; Connor SJ; Ghaly S; Hold G, 2024, 'Longitudinal microbial dynamics in an Australian adult inflammatory bowel disease cohort', in JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY, WILEY, Vol. 39, pp. 209 - 210

Jayawardana T; Little R; Zhang F; Koentgen S; Wu N; Tavakoli P; Chung A; Ho A; Boussioutas A; Ward M; Sparrow MP; Gibson P; Ghaly S; Corte C; Talley NJ; Leach S; Dutt S; Lemberg A; Paramsothy S; Leong R; Connor SJ; Hold G, 2024, 'Microbial signatures associated with inflammatory bowel disease in Australia: baseline sequencing from the Australian IBD Microbiome study', in JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY, WILEY, Vol. 39, pp. 216 - 217

Giddings H; Ng K-S; Solomon M; Arzivian A; Haifer C; Lin H; Pappas C; Clark D; Deacon A; Radford-Smith G; Ebrahimi N; Wu A; Lewis M; Lim R; Zhang J; Vasudevan A; Demase K; Karp J; Fernandes R; An Y-K; Ng ZQ; Mackenzie S; Thin L; Greeve T; Moore G; Ghaly S, 2024, 'Post operative recurrence and surgical outcomes following Crohn's ileocolic resections in Australia (PORSCIA study)', in JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY, WILEY, Vol. 39, pp. 248 - 249

Koentgen S; Zhang F; Wu N; Jayawardana T; Little R; Tavakoli P; Ghaly S; Connor SJ; Hold G, 2024, 'Unique faecal microbial profiles in first degree relatives of inflammatory bowel disease patients', in JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY, WILEY, Vol. 39, pp. 209 - 209

Suo P; Thin L; Srinivasan A; Winston J; Jeffrey A; Menon S; Ghaly S; Haifer C, 2023, 'Comparing long-term outcomes in inflammatory bowel disease patients between switch and non-switch cohorts: no differences in infliximab persistence or safety outcomes after 54 months', in JOURNAL OF CROHNS & COLITIS, OXFORD UNIV PRESS, Vol. 17, pp. 884 - 884, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000960367601460&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Pudipeddi A; Paramsothy S; Kariyawasam V; Paramsothy R; Ghaly S; Haifer C; An YK; Begun J; Connor S; Corte C; Ward M; De Cruz P; Fung C; Redmond D; Leong RW, 2023, 'Withdrawal versus continuation of thiopurine in vedolizumab-treated patients with Ulcerative Colitis (VIEWS): a multi-centre randomised controlled trial', in JOURNAL OF CROHNS & COLITIS, OXFORD UNIV PRESS, Vol. 17, pp. 542 - 542, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000960367601125&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Pudipeddi A; Fung C; Kariyawasam V; Paramsothy R; Ghaly S; Haifer C; An Y; Begun J; Connor S; Chetwood J; Paramsothy S; Leong R, 2022, 'HISTOLOGICAL REMISSION USING A NANCY INDEX OF 0 IS ASSOCIATED WITH LONGER RELAPSE-FREE SURVIVAL THAN HISTOLOGICAL ACTIVITY IN PATIENTS WITH ULCERATIVE COLITIS IN CLINICAL AND ENDOSCOPIC REMISSION', in GUT, BMJ PUBLISHING GROUP, Vol. 71, pp. A149 - A150, http://dx.doi.org/10.1136/gutjnl-2022-IDDF.207

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