By Dr Nona Farbehi

Preprints

Zahedi R; Argha A; Farbehi N; Bakhshayeshi I; Ye Y; Lovell NH; Alinejad-Rokny H, 2025, SemanticST: Spatially Informed Semantic Graph Learning for Clustering, Integration, and Scalable Analysis of Spatial Transcriptomics, http://dx.doi.org/10.48550/arxiv.2506.11491

Haghighattalab M; Karimi F; Farbehi N; Rnjak-Kovacina J, 2025, Evaluating Flow-Focused Microfluidic Device Fabrication Techniques for Silk Fibroin Microgel Production, http://dx.doi.org/10.1101/2025.02.02.636143

Liang Y; Abedini S; Farbehi N; Alinejad-Rokny H, 2024, How chromatin interactions shed light on interpreting non-coding genomic variants: opportunities and future direc-tions, http://dx.doi.org/10.48550/arxiv.2411.17956

Nazeen S; Wang X; Zielinski D; Lam I; Hallacli E; Xu P; Ethier E; Strom R; Zanella CA; Nithianandam V; Ritter D; Henderson A; Saurat N; Afroz J; Nutter-Upham A; Benyamini H; Copty J; Ravishankar S; Morrow A; Mitchel J; Neavin D; Gupta R; Farbehi N; Grundman J; Myers RH; Scherzer CR; Trojanowski JQ; Van Deerlin VM; Cooper AA; Lee EB; Erlich Y; Lindquist S; Peng J; Geschwind DH; Powell J; Studer L; Feany MB; Sunyaev SR; Khurana V, 2024, Deep sequencing of proteotoxicity modifier genes uncovers a Presenilin-2/beta-amyloid-actin genetic risk module shared among alpha-synucleinopathies., http://dx.doi.org/10.1101/2024.03.03.583145

Daniszewski M; Senabouth A; Liang H; Han X; Lidgerwood G; Hernández D; Sivakumaran P; Clarke J; Lim S; Lees J; Rooney L; Gulluyan L; Souzeau E; Graham S; Chan C-L; Nguyen U; Farbehi N; Gnanasambandapillai V; McCloy R; Clarke L; Kearns L; Mackey D; Craig J; MacGregor S; Powell J; Pébay A; Hewitt A, 2021, Retinal ganglion cell-specific genetic regulation in primary open angle glaucoma, http://dx.doi.org/10.1101/2021.07.14.452417

Senabouth A; Daniszewski M; Lidgerwood G; Liang H; Hernández D; Mirzaei M; Zhang R; Han X; Neavin D; Rooney L; Sanchez IL; Gulluyan L; Paulo J; Clarke L; Kearns L; Gnanasambandapillai V; Chan C-L; Nguyen U; Steinmann A; Zekanovic R; Farbehi N; Gupta V; Mackey D; Bylsma G; Verma N; MacGregor S; Guymer R; Powell J; Hewitt A; Pébay A, 2021, Transcriptomic and proteomic retinal pigment epithelium signatures of age-related macular degeneration, http://dx.doi.org/10.1101/2021.08.19.457044

Valdes-Mora F; Salomon R; Gloss B; Law AMK; Castillo L; Murphy K; Venhuizen J; Magenau A; Papanicolau M; de la Fuente LR; Roden D; Colino-Sanguino Y; Kikhtyak Z; Farbehi N; Conway JRW; Oakes S; Sikta N; O’Donoghue S; Cox T; Timpson P; Ormandy C; Gallego-Ortega D, 2019, Single cell transcriptomics reveals involution mimicry during the specification of the basal breast cancer subtype, http://dx.doi.org/10.1101/624890

Asli N; Xaymardan M; Patrick R; Farbehi N; Cornwell J; Forte E; Waardenberg A; Janbandhu V; Kesteven S; Chandrakanthan V; Malinowska H; Reinhard H; Schofield P; Christ D; Ahmed I; Bouveret R; Srivastava S; Mishra R; Dhawan J; Chong JJH; Nordon R; Macdonald P; Graham R; Feneley M; Harvey R, 2017, PDGFRα signaling in cardiac fibroblasts modulates quiescence, metabolism and self-renewal, and promotes anatomical and functional repair, http://dx.doi.org/10.1101/225979

Valdes-Mora F; Salomon R; Gloss B; Law AMK; Castillo L; Murphy K; Venhuizen J; Magenau A; Papanicolau M; Rodriguez de la Fuente L; Roden DL; Colino-Sanguino Y; Kikhtyak Z; Farbehi N; Conway JRW; Oakes SR; Sikta N; O'Donoghue SI; Cox TR; Timpson P; Ormandy CJ; Gallego Ortega D, Single Cell Transcriptomics Reveals Involution Mimicry During the Specification of the Basal Breast Cancer Subtype, http://dx.doi.org/10.2139/ssrn.3634808

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