By Dr Charles Foster

Preprints

Zufan S; Lau K; Donald A; Hoang T; Foster CSP; Sikazwe C; Theis T; Rawlinson W; Ballard S; Stinear T; Howden B; Jennison A; Seemann T, 2023, Bioinformatic investigation of discordant sequence data for SARS-CoV-2: insights for robust genomic analysis during pandemic surveillance, http://dx.doi.org/10.1101/2023.02.01.526694

Foster CSP; Walker G; Jean T; Wong M; Brassil L; Isaacs S; Lyu Y; Turville S; Kelleher A; Rawlinson W, 2023, Long-term serial passaging of SARS-CoV-2 reveals signatures of convergent evolution, http://dx.doi.org/10.1101/2023.11.02.565396

Beasley-Hall P; Kinjo Y; Rose H; Walker J; Foster C; Kovacs T; Bourguignon T; Ho S; Lo N, 2023, Shrinking in the dark: Parallel endosymbiont genome erosions are associated with repeated host transitions to an underground life, http://dx.doi.org/10.1101/2023.09.11.557272

Akerman A; Milogiannakis V; Jean T; Esneau C; Silva MR; Ison T; Fitcher C; Lopez J; Chandra D; Naing Z; Caguicla J; Li D; Walker G; Amatayakul-Chantler S; Roth N; Manni S; Hauser T; Barnes T; Condylios A; Yeang M; Wong M; Foster CSP; Sato K; Lee S; Song Y; Mao L; Sigmund A; Phu A; Vande More AM; Hunt S; Douglas M; Caterson I; Sandgren K; Bull R; Lloyd A; Triccas J; Tangye S; Bartlett N; Darley D; Matthews G; Stark D; Rawlinson W; Murrell B; Brilot F; Cunningham A; Kelleher A; Aggarwal A; Turville S, 2022, Emergence and antibody evasion of BQ, BA.2.75 and SARS-CoV-2 recombinant sublineages in the face of maturing antibody breadth at the population level, http://dx.doi.org/10.1101/2022.12.06.22283000

Foster CSP; Bull R; Tedla N; Santiago F; Agapiou D; Adhikari A; Walker G; Shrestha LB; van Hal S; Kim KW; Rawlinson W, 2022, Persistence of a SARS-CoV-2 variant with a frameshifting deletion for the duration of a major outbreak, http://dx.doi.org/10.1101/2022.09.06.22279658

Aggarwal A; Akerman A; Milogiannakis V; Silva MR; Walker G; Kidinger A; Angelovich T; Waring E; Amatayakul-Chantler S; Roth N; Yeang M; Jean T; Foster C; Hoppe AC; Munier ML; Darley D; Churchill M; Starck D; Christ D; Matthews G; Rawlinson W; Kelleher A; Turville S, 2022, SARS-CoV-2 Omicron BA.5: Evolving Tropism and Evasion of Potent Humoral Responses and Resistance to Clinical Immunotherapeutics Relative to Viral Variants of Concern, http://dx.doi.org/10.2139/ssrn.4157473

Aggarwal A; Akerman A; Milogiannakis V; Silva MR; Walker G; Kidinger A; Angelovich T; Waring E; Amatayakul-Chantler S; Roth N; Coppola G; Yeang M; Jean T; Foster C; Hoppe AC; Ling Munier M; Darley D; Churchill M; Starck D; Christ D; Matthews G; Rawlinson W; Kelleher A; Turville S, 2022, SARS-CoV-2 Omicron BA.5: Evolving tropism and evasion of potent humoral responses and resistance to clinical immunotherapeutics relative to viral variants of concern, http://dx.doi.org/10.1101/2022.07.07.22277128

Tai J-H; Low YK; Wang SC-L; Lin H-F; Wang T-Y; Wang J-T; Liu Y-S; Lin Y-Y; Foster CSP; van Hal S; Lai Y-Y; Yeh S-H; Chang S-Y; Chen P-J; Chaw S-M, 2022, Spatial and Temporal Origin of The Third SARS-Cov-2 Outbreak in Taiwan, http://dx.doi.org/10.1101/2022.07.04.498645

Foster CSP; Stelzer-Braid S; Deveson I; Bull R; Yeang M; Phan-Au J; Silva MR; van Hal S; Rockett R; Sintchenko V; Kim KW; Rawlinson W, 2021, Assessment of inter-laboratory differences in SARS-CoV-2 consensus genome assemblies between public health laboratories in Australia, http://dx.doi.org/10.1101/2021.08.19.21262296

Beasley-Hall P; Bertozzi T; Bradford T; Foster C; Jones K; Tierney S; Humphreys W; Austin A; Cooper S, 2021, Differential transcriptomic responses to heat stress in surface and subterranean diving beetles, http://dx.doi.org/10.1101/2021.12.12.470823

Foster CSP; Rawlinson W, 2021, Rapid spread of a SARS-CoV-2 Delta variant with a frameshift deletion in ORF7a, http://dx.doi.org/10.1101/2021.08.18.21262089

Duchêne D; Tong J; Foster C; Duchêne S; Lanfear R; Ho S, 2018, Linking Branch Lengths Across Loci Provides the Best Fit for Phylogenetic Inference, http://dx.doi.org/10.1101/467449

Foster C; Ho S, 2017, Strategies for Partitioning Clock Models in Phylogenomic Dating: Application to the Angiosperm Evolutionary Timescale, http://dx.doi.org/10.1101/144287

Tai J-H; Low YK; Lin H-F; Wang T-Y; Lin Y-Y; Foster C; van Hal S; Lai Y-Y; Yeh S-H; Chang S-Y; Chen P-J; Chaw S-M; Wang H-Y, Spatial and Temporal Origin of the Third SARS-CoV-2 Outbreak in Taiwan, http://dx.doi.org/10.2139/ssrn.4201397

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