By Associate Professor Matthew Baker

Journal articles

Ma Q; Sowa Y; Baker MAB; Bai F, 2016, 'Bacterial Flagellar Motor Switch in Response to CheY-P Regulation and Motor Structural Alterations', Biophysical Journal, 110, pp. 1411 - 1420, http://dx.doi.org/10.1016/j.bpj.2016.02.023

Baker MAB; Hynson RMG; Ganuelas LA; Mohammadi NS; Liew CW; Rey AA; Duff AP; Whitten AE; Jeffries CM; Delalez NJ; Morimoto YV; Stock D; Armitage JP; Turberfield AJ; Namba K; Berry RM; Lee LK, 2016, 'Domain-swap polymerization drives the self-assembly of the bacterial flagellar motor', Nature Structural and Molecular Biology, 23, pp. 197 - 203, http://dx.doi.org/10.1038/nsmb.3172

Al-Zyoud WA; Hynson RMG; Ganuelas LA; Coster ACF; Duff AP; Baker MAB; Stewart AG; Giannoulatou E; Ho JWK; Gaus K; Liu D; Lee LK; Böcking T; Baker M, 2016, 'Binding of transcription factor GabR to DNA requires recognition of DNA shape at a location distinct from its cognate binding site', Nucleic Acids Research, 44, pp. 1411 - 1420, http://dx.doi.org/10.1093/nar/gkv1466

Xue R; Ma Q; Baker MAB; Bai F; Baker M, 2015, 'A Delicate Nanoscale Motor Made by Nature—The Bacterial Flagellar Motor', Advanced Science, 2, pp. 1500129, http://dx.doi.org/10.1002/advs.201500129

Baker MAB; Rojko N; Cronin B; Anderluh G; Wallace MI, 2014, 'Photobleaching reveals heterogeneous stoichiometry for equinatoxin II oligomers', Chembiochem, 16, pp. 2139 - 2145, http://dx.doi.org/10.1002/cbic.201300799

Rojko N; Cronin B; Danial JSH; Baker MAB; Anderluh G; Wallace MI, 2014, 'Imaging the lipid-phase-dependent pore formation of equinatoxin II in droplet interface bilayers', Biophysical Journal, 106, pp. 1630 - 1637, http://dx.doi.org/10.1016/j.bpj.2013.11.4507

Alcock F; Baker MAB; Greene NP; Palmer T; Wallace MI; Berks BC, 2013, 'Live cell imaging shows reversible assembly of the TatA component of the twin-arginine protein transport system.', PNAS, 110, pp. E3650 - E3659, http://dx.doi.org/10.1073/pnas.1306738110

Inoue Y; Baker MAB; Fukuoka H; Takahashi H; Berry RM; Ishijima A, 2013, 'Temperature Dependences of Torque Generation and Membrane Voltage in the Bacterial Flagellar Motor', Biophysical Journal, 105, pp. 2801 - 2810, http://dx.doi.org/10.1016/j.bpj.2013.09.061

Panchompoo J; Aldous L; Baker M; Wallace MI; Compton RG, 2012, 'One-step synthesis of fluorescein modified nano-carbon for Pd(ii) detection via fluorescence quenching', Analyst, 137, pp. 2054 - 2062, http://dx.doi.org/10.1039/c2an16261j

Baker MAB; Inoue Y; Takeda K; Ishijima A; Berry RM, 2011, 'Two methods of temperature control for single-molecule measurements.', European biophysics journal : EBJ

Baker MA; Inoue Y; Lo C-J; Ishijima A; Berry R, 2010, 'Response of the Bacterial Flagellar Motor to Controlled Temperature Change', BIOPHYSICAL JOURNAL, 98, pp. 159A - 159A, http://dx.doi.org/10.1016/j.bpj.2009.12.856

Baker MAB; Berry RM, 2009, 'An Introduction to the physics of the bacterial flagellar motor: a nanoscale rotary electric motor', Contemporary Physics, 50, pp. 617 - 632

Baker MA, 2009, 'Probing the Bacterial Flagellar Motor using Temperature Control', Biophysical Journal, 96, pp. 519a - 519a, http://dx.doi.org/10.1016/j.bpj.2008.12.2672

Carberry DM; Baker MAB; Wang GM; Sevick EM; Evans DJ, 2007, 'An optical trap experiment to demonstrate fluctuation theorems in viscoelastic media', Journal of Optics A: Pure and Applied Optics, 9, pp. 204 - 204

Conference Papers

Gao S; Baker MAB; Pagnucco M; Song Y, 2025, 'Multimodal Weakly Supervised Segmentation for Histopathology', in Proceedings International Symposium on Biomedical Imaging, http://dx.doi.org/10.1109/ISBI60581.2025.10980775

Hertel S; Liew CW; Baker MA; Lee LK, 2017, 'Artificial assembly of the bacterial flagella motor protein FliG on DNA nanostructures', in EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS, SPRINGER, SCOTLAND, British Biophys Soc, Edinburgh, pp. S345 - S345, presented at 19th IUPAB Congress / 11th EBSA Congress, SCOTLAND, British Biophys Soc, Edinburgh, 16 July 2017 - 20 July 2017, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000416406202012&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Baker MA; Tuckwell AJ; Berengut JF; Bath J; Benn F; Duff AP; Whitten AE; Dunn KE; Hynson RM; Turberfield AJ; Lee LK, 2017, 'DNA origami dimensions and structure measured by solution X-ray scattering', in EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS, SPRINGER, SCOTLAND, British Biophys Soc, Edinburgh, pp. S137 - S137, presented at 19th IUPAB Congress / 11th EBSA Congress, SCOTLAND, British Biophys Soc, Edinburgh, 16 July 2017 - 20 July 2017, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000416406200296&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Baker MA; Alcock F; Greene NP; Palmer T; Wallace MI; Berks BC, 2013, 'Reversible assembly of twin-arginine protein translocation sites', in EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS, SPRINGER, PORTUGAL, Lisbon, pp. S78 - S78, presented at 9th European-Biophysical-Societies-Association Congress, PORTUGAL, Lisbon, 13 July 2013 - 17 July 2013, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000330215300163&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Recorded / Rendered Creative Works

Baker M, 2017, The Full Cost of Fraud, Radio National, ABC, Radio, Published: 04 September 2017, Duration: 00:26:30, Recorded / Rendered Creative Works, http://www.abc.net.au/radionational/programs/earshot/the-full-cost-of-fraud/8805412

Baker MAB; Etherington B, 2016, Roast or Fry: Dancehall in the Yards of Kingston, Radio, Published: 07 June 2016, Duration: 00:26:30, Recorded / Rendered Creative Works, http://www.abc.net.au/radionational/programs/earshot/roast-or-fry:-dancehall-in-the-yards-of-kingston/7444230

Preprints

Matzke NJ; Puente-Lelievre C; Baker MAB, 2025, A Pipeline for Generating Datasets of 3-Dimensional Tertiary Interaction Characters for Model-Based Structural Phylogenetics, http://dx.doi.org/10.31219/osf.io/5uhkx_v1

Feng X; Tachiyama S; He J; Zhu S; Zhao H; Botting JM; Liu Y; Chen Y; Hua C; Lara-Tejero M; Baker MAB; Gao X; Liu J; Gao B, 2025, The architecture, assembly, and evolution of a complex flagellar motor., http://dx.doi.org/10.1101/2025.02.19.638559

Gaston J; Meepat S; Islam MS; Daljit Singh JK; Booth M; Wickham SFJ; Baker MAB, 2025, The effect of PEGylation on surface tethering of liposomes via DNA nanotechnology, http://dx.doi.org/10.1101/2025.07.07.663613

Brown H; Islam MI; Ruan J; Baker M; Ithurbide S; Duggin I, 2024, CetZ1-dependent polar assembly of the archaeal motility machinery, http://dx.doi.org/10.1101/2024.05.02.592137

Mason A; Wickham SFJ; Baker MAB, 2024, DIB-BOT: An open-source hardware approach for high throughput droplet interface bilayer deposition, http://dx.doi.org/10.1101/2024.01.26.577347

Ridone P; Baker MAB, 2024, Hybrid Exb/Mot stators require substitutions distant from the chimeric pore to power flagellar rotation, http://dx.doi.org/10.1101/2024.03.12.584617

Gurung J; Ridone P; Biquet-Bisquert A; Bryant G; Pedaci F; Nord A; Baker MAB, 2024, Insertion of fluorescent proteins near the plug domain of MotB generates functional stator complex, http://dx.doi.org/10.1101/2024.09.27.615325

Philip JS; Grewal S; Scadden J; Puente-Lelievre C; Matzke N; McNally L; Baker MAB, 2024, Mapping the loss of flagellar motility across the tree of life, http://dx.doi.org/10.1101/2024.12.05.626484

Puente-Lelievre C; Ridone P; Douglas J; Amritkar K; Kaçar B; Baker M; Matzke N, 2024, Molecular and structural innovations of the stator motor complex at the dawn of flagellar motility, http://dx.doi.org/10.1101/2024.07.22.604496

Scadden J; Pandit D; Ridone P; Sowa Y; Baker MAB, 2024, Rescue of bacterial motility using two and three-species FliC chimeras, http://dx.doi.org/10.1101/2024.12.02.626473

Gurung J; Kashani M; de Silva C; Baker MAB, 2023, Microbial stir bars: light-activated rotation of tethered bacterial cells to enhance mixing in stagnant fluids, http://dx.doi.org/10.1101/2023.01.26.525760

Puente-Lelievre C; Malik A; Douglas J; Ascher D; Baker M; Allison J; Poole A; Lundin D; Fullmer M; Bouckert R; Kim H; Steinegger M; Matzke N, 2023, Tertiary-interaction characters enable fast, model-based structural phylogenetics beyond the twilight zone, http://dx.doi.org/10.1101/2023.12.12.571181

Hamm J; Liao Y; Kügelgen AV; Dombrowski N; Landers E; Brownlee C; Johansson E; Whan R; Baker M; Baum B; Bharat T; Duggin I; Spang A; Cavicchioli R, 2023, The parasitic lifestyle of an archaeal symbiont, http://dx.doi.org/10.1101/2023.02.24.529834

Ridone P; Winter D; Baker M, 2023, Tuning the stator subunit of the flagellar motor with coiled-coil engineering, http://dx.doi.org/10.1101/2023.03.05.530362

Islam MI; Ridone P; Lin A; Michie K; Matzke N; Hochberg G; Baker MAB, 2022, Ancestral reconstruction of the MotA stator subunit reveals that conserved residues far from the pore are required to drive flagellar motility, http://dx.doi.org/10.1101/2022.10.17.512626

Li J; Jamieson W; Dimitriou P; Xu W; Rohde P; Martinac B; Baker M; Drinkwater B; Castell O; Barrow D, 2022, Building programmable multicompartment artificial cells incorporating remotely activated protein channels using microfluidics and acoustic levitation, http://dx.doi.org/10.1101/2022.01.13.476178

Mandal A; Priyam S; Chan HH; Gouveia BM; Guitera P; Song Y; Baker MAB; Vafaee F, 2022, Computer-aided diagnosis of reflectance confocal images to differentiate between lentigo maligna (LM) and atypical intraepidermal melanocytic proliferation (AIMP), http://dx.doi.org/10.1101/2022.05.10.491423

Matzke N; Lin A; Stone M; Baker M, 2021, Homology between the flagellar export apparatus and ATP synthetase: evidence from synteny predating the Last Universal Common Ancestor, http://dx.doi.org/10.1101/2021.01.01.425057

Islam MI; Bae JH; Ishida T; Ridone P; Lin J; Kelso MJ; Sowa Y; Buckley BJ; Baker MAB, 2021, Novel amiloride derivatives that inhibit bacterial motility across multiple strains and stator types, http://dx.doi.org/10.1101/2021.04.13.439105

Ridone P; Ishida T; Lin A; Humphreys D; Giannoulatou E; Sowa Y; Baker M, 2021, The rapid evolution of flagellar ion-selectivity in experimental populations ofE. coli, http://dx.doi.org/10.1101/2021.01.26.427765

Daljit Singh JK; Darley E; Ridone P; Gaston J; Abbas A; Wickham SFJ; Baker MAB, 2020, Binding of DNA origami to lipids: maximising yield and switching via strand-displacement, http://dx.doi.org/10.1101/2020.06.01.128686

Gurung J; Kashani MN; Agarwal S; Peralta G; Gel M; Baker MAB, 2020, Separation and enrichment of sodium-motile bacteria using cost-effective microfluidics, http://dx.doi.org/10.1101/2020.11.24.395772

Nieves DJ; Hilzenrat G; Tran J; Yang Z; MacRae HH; Baker MAB; Gooding JJ; Gaus K, 2019, tagPAINT: covalent labelling of genetically encoded protein tags for DNA-PAINT imaging, http://dx.doi.org/10.1101/604462

Jaggers O; Ridone P; Martinac B; Baker M, 2018, Fluorescence Microscopy of Piezo1 in Droplet Hydrogel Bilayers, http://dx.doi.org/10.1101/508176

Ishida T; Ito R; Clark J; Matzke N; Sowa Y; Baker MAB, 2018, Sodium-powered stators of the bacterial flagellar motor can generate torque in the presence of phenamil with mutations near the peptidoglycan-binding region, http://dx.doi.org/10.1101/507533

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