Journal articles
Shen S;  Werner T;  Lukowski SW;  Andersen S;  Sun Y;  Shim WJ;  Mizikovsky D;  Kobayashi S;  Outhwaite J;  Chiu HS;  Chen X;  Chapman G;  Martin EMMA;  Xia D;  Pham D;  Su Z;  Kim D;  Yang P;  Tan MC;  Sinniah E;  Zhao Q;  Negi S;  Redd MA;  Powell JE;  Dunwoodie SL;  Tam PPL;  Bodén M;  Ho JWK;  Nguyen Q;  Palpant NJ, 2025, 'Atlas of multilineage stem cell differentiation reveals TMEM88 as a developmental regulator of blood pressure', Nature Communications, 16, http://dx.doi.org/10.1038/s41467-025-56533-2
Korshevniuk M;  Westra HJ;  Oelen R;  van der Wijst MGP;  Franke L;  Bonder MJ;  Powell JE;  Melé M;  Mahfouz A;  Hemberg M;  Ye J;  Yazar S;  Trynka G;  Shin JW;  Shahin T;  Rajagopalan D;  Park WY;  Stegle O;  Okada Y;  Nawijn MC;  Moody J;  Manikanda V;  Idaghdour Y;  Hon CC;  van der Harst P;  Groot HE;  Gordon MG;  Dieng MM;  van Blokland I;  Bayaraa O;  Ando Y;  Vochterloo M;  Ripoll-Cladellas A;  Neavin D;  Michielsen L;  Lee JTH;  Kaptijn D;  Alquicira-Hernández J, 2025, 'Optimized summary-statistic-based single-cell eQTL meta-analysis', Scientific Reports, 15, http://dx.doi.org/10.1038/s41598-025-08808-3
Chin VT;  Muskovic W;  McCloy RA;  Neavin DR;  Alquicira-Hernandez J;  Arora H;  Senabouth A;  Sudhakar KK;  Keith P;  Spenceley E;  Kaczorowski D;  Floros P;  Leavers B;  Crawford JA;  Gallagher R;  Powell JE, 2025, 'Protein translation dysregulation and immune cell evasion mediated by IFN and immunoproteasome downregulation define metastatic clones in HPV-related cancer of the oropharynx', BMC Medicine, 23,  pp. 559, http://dx.doi.org/10.1186/s12916-025-04392-5
Zhou Y;  Adeluwa T;  Zhu L;  Salazar-Magaña S;  Sumner S;  Kim H;  Gona S;  Nyasimi F;  Kulkarni R;  Powell JE;  Madduri R;  Liu B;  Chen M;  Im HK, 2025, 'scPrediXcan integrates deep learning methods and single-cell data into a cell-type-specific transcriptome-wide association study framework', Cell Genomics, 5, http://dx.doi.org/10.1016/j.xgen.2025.100875
Holton E;  Muskovic W;  Powell JE, 2024, 'Deciphering cancer cell state plasticity with single-cell genomics and artificial intelligence', Genome Medicine, 16, http://dx.doi.org/10.1186/s13073-024-01309-4
Neavin D;  Senabouth A;  Arora H;  Lee JTH;  Ripoll-Cladellas A;  Franke L;  Prabhakar S;  Ye CJ;  McCarthy DJ;  Melé M;  Hemberg M;  Powell JE, 2024, 'Demuxafy: improvement in droplet assignment by integrating multiple single-cell demultiplexing and doublet detection methods', Genome Biology, 25, http://dx.doi.org/10.1186/s13059-024-03224-8
Zaman A;  Muskovic W;  Holton E;  Pandya M;  Zekanovic R;  Chin V;  Lam E;  Moutinho C;  Yeung J;  Teo C;  Sughrue M;  Powell J, 2024, 'STEM-01. SHARED ASTROCYTE-LIKE GLIOMA STEM CELLS DRIVE HETEROGENEITY AND IMMUNE DYNAMICS IN ADULT-TYPE DIFFUSE GLIOMAS', Neuro-Oncology, 26,  pp. viii57 - viii57, http://dx.doi.org/10.1093/neuonc/noae165.0227
Dsouza R;  Skarne N;  Mulay O;  Harris L;  Holton E;  Zaman A;  Akgul S;  Offenhauser C;  Alexander H;  Lwin Z;  Jeffree R;  Inglis P-L;  Powell J;  Nguyen Q;  Boyd A;  Day B, 2024, 'TARGETING EPHA3 AND EPHRIN A5: ADVANCED PRECISION THERAPY FOR GBM', NEURO-ONCOLOGY, 26, http://dx.doi.org/10.1093/neuonc/noae165.0941
Zaman A;  Muskovic W;  Holton E;  Pandya M;  Zakanovic R;  Chin V;  Lam E;  Yeung J;  Sughrue M;  Teo C;  Powell J, 2024, 'A BRAIN CANCER CELL ATLAS REVEALS SHARED ASTROCYTE-LIKE STEM CELL STATES DRIVE INTRATUMOURAL HETEROGENEITY AND SHAPE IMMUNE DYNAMICS IN ADULT-TYPE DIFFUSE GLIOMAS', NEURO-ONCOLOGY, 26,  pp. V3 - V3, http://dx.doi.org/10.1093/neuonc/noae144.007
Cartland SP;  Patil MS;  Kelland E;  Le N;  Boccanfuso L;  Stanley CP;  Cholan PM;  Dona MI;  Patrick R;  McGrath J;  Su QP;  Alwis I;  Ganss R;  Powell JE;  Harvey RP;  Pinto AR;  Griffith TS;  Loa J;  Aitken SJ;  Robinson DA;  Patel S;  Kavurma MM, 2024, 'The generation of stable microvessels in ischemia is mediated by endothelial cell derived TRAIL', Science Advances, 10, http://dx.doi.org/10.1126/sciadv.adn8760
Rumker L;  Sakaue S;  Reshef Y;  Kang JB;  Yazar S;  Alquicira-Hernandez J;  Valencia C;  Lagattuta KA;  Mah-Som A;  Nathan A;  Powell JE;  Loh PR;  Raychaudhuri S, 2024, 'Identifying genetic variants that influence the abundance of cell states in single-cell data', Nature Genetics, 56,  pp. 2068 - 2077, http://dx.doi.org/10.1038/s41588-024-01909-1
Greatbatch CJ;  Lu Q;  Hung S;  Tran SN;  Wing K;  Liang H;  Han X;  Zhou T;  Siggs OM;  Mackey DA;  Liu GS;  Cook AL;  Powell JE;  Craig JE;  MacGregor S;  Hewitt AW, 2024, 'Deep Learning-Based Identification of Intraocular Pressure-Associated Genes Influencing Trabecular Meshwork Cell Morphology', Ophthalmology Science, 4, http://dx.doi.org/10.1016/j.xops.2024.100504
Chauquet S;  Willis EF;  Grice L;  Harley SBR;  Powell JE;  Wray NR;  Nguyen Q;  Ruitenberg MJ;  Shah S;  Vukovic J, 2024, 'Exercise rejuvenates microglia and reverses T cell accumulation in the aged female mouse brain', Aging Cell, 23, http://dx.doi.org/10.1111/acel.14172
Greatbatch CJ;  Lu Q;  Hung S;  Barnett AJ;  Wing K;  Liang H;  Han X;  Zhou T;  Siggs OM;  Mackey DA;  Cook AL;  Senabouth A;  Liu GS;  Craig JE;  MacGregor S;  Powell JE;  Hewitt AW, 2024, 'High throughput functional profiling of genes at intraocular pressure loci reveals distinct networks for glaucoma', Human Molecular Genetics, 33,  pp. 739 - 751, http://dx.doi.org/10.1093/hmg/ddae003
Farbehi N;  Neavin DR;  Cuomo ASE;  Studer L;  MacArthur DG;  Powell JE, 2024, 'Integrating population genetics, stem cell biology and cellular genomics to study complex human diseases', Nature Genetics, 56,  pp. 758 - 766, http://dx.doi.org/10.1038/s41588-024-01731-9
Goldinger A;  Shakhbazov K;  Henders AK;  McRae AF;  Montgomery GW;  Powell JE, 2024, 'Erratum: Correction: Seasonal Effects on Gene Expression (PloS one (2015) 10 5 DOI: 10.1371/journal.pone.0126995)', Plos One, 19,  pp. e0316470, http://dx.doi.org/10.1371/journal.pone.0316470
Wang Q;  Wang M;  Choi I;  Sarrafha L;  Liang M;  Ho L;  Farrell K;  Beaumont KG;  Sebra R;  De Sanctis C;  Crary JF;  Ahfeldt T;  Blanchard J;  Neavin D;  Powell J;  Davis DA;  Sun X;  Zhang B;  Yue Z, 2024, 'Molecular profiling of human substantia nigra identifies diverse neuron types associated with vulnerability in Parkinson’s disease', Science Advances, 10, http://dx.doi.org/10.1126/sciadv.adi8287
Zhou Z;  Du J;  Wang J;  Liu L;  Gordon MG;  Ye CJ;  Powell JE;  Li MJ;  Rao S, 2024, 'SingleQ: a comprehensive database of single-cell expression quantitative trait loci (sc-eQTLs) cross human tissues', Database, 2024, http://dx.doi.org/10.1093/database/baae010
Zhou W;  Cuomo A;  Xue A;  Kanai M;  Chau G;  Krishna C;  Xavier R;  MacArthur D;  Powell J;  Daly M;  Neale B, 2024, 'W28. EFFICIENT AND ACCURATE MIXED MODEL ASSOCI-ATION TOOL FOR SINGLE-CELL EQTL ANALYSIS', EUROPEAN NEUROPSYCHOPHARMACOLOGY, 87,  pp. 115 - 116, http://dx.doi.org/10.1016/j.euroneuro.2024.08.237
Neavin DR;  Steinmann AM;  Farbehi N;  Chiu HS;  Daniszewski MS;  Arora H;  Bermudez Y;  Moutinho C;  Chan CL;  Bax M;  Tyebally M;  Gnanasambandapillai V;  Lam CE;  Nguyen U;  Hernández D;  Lidgerwood GE;  Graham RM;  Hewitt AW;  Pébay A;  Palpant NJ;  Powell JE, 2023, 'A village in a dish model system for population-scale hiPSC studies', Nature Communications, 14, http://dx.doi.org/10.1038/s41467-023-38704-1
Kang JB;  Shen AZ;  Gurajala S;  Nathan A;  Rumker L;  Aguiar VRC;  Valencia C;  Lagattuta KA;  Zhang F;  Jonsson AH;  Yazar S;  Alquicira-Hernandez J;  Khalili H;  Ananthakrishnan AN;  Jagadeesh K;  Dey K;  Albrecht J;  Apruzzese W;  Banda N;  Barnas JL;  Bathon JM;  Ben-Artzi A;  Boyce BF;  Boyle DL;  Bridges SL;  Bykerk VP;  Campbell D;  Carr HL;  Ceponis A;  Chicoine A;  Cordle A;  Curtis M;  Deane KD;  DiCarlo E;  Dunn P;  Filer A;  Firestein GS;  Forbess L;  Geraldino-Pardilla L;  Goodman SM;  Gravallese EM;  Gregersen PK;  Guthridge JM;  Holers VM;  Horowitz D;  Hughes LB;  Ishigaki K;  Ivashkiv LB;  James JA;  Keras G;  Korsunsky I;  Lakhanpal A;  Lederer JA;  Lewis M;  Li ZJ;  Li Y;  Liao KP;  Mandelin AM;  Mantel I;  Marks KE;  Maybury M;  McDavid A;  McGeachy MJ;  Mears J;  Meednu N;  Millard N;  Moreland LW;  Nayar S;  Nerviani A;  Orange DE;  Perlman H;  Pitzalis C;  Rangel-Moreno J;  Raza K;  Reshef Y;  Ritchlin C;  Rivellese F;  Robinson WH;  Sahbudin I;  Singaraju A;  Seifert JA;  Slowikowski K;  Smith MH;  Tabechian D;  Scheel-Toellner D;  Utz PJ;  Watts GFM;  Wei K;  Weinand K;  Weisenfeld D;  Weisman MH;  Wyse A;  Xiao Q;  Zhu Z;  Daly MJ;  Xavier RJ;  Donlin LT;  Anolik JH;  Powell JE;  Rao DA, 2023, 'Mapping the dynamic genetic regulatory architecture of HLA genes at single-cell resolution', Nature Genetics, 55,  pp. 2255 - 2268, http://dx.doi.org/10.1038/s41588-023-01586-6
Dai Q;  Zhou G;  Zhao H;  Võsa U;  Franke L;  Battle A;  Teumer A;  Lehtimäki T;  Raitakari OT;  Esko T;  Agbessi M;  Ahsan H;  Alves I;  Andiappan AK;  Arindrarto W;  Awadalla P;  Beutner F;  Jan Bonder M;  Boomsma DI;  Christiansen MW;  Claringbould A;  Deelen P;  Favé MJ;  Frayling T;  Gharib SA;  Gibson G;  Heijmans BT;  Hemani G;  Jansen R;  Kähönen M;  Kalnapenkis A;  Kasela S;  Kettunen J;  Kim Y;  Kirsten H;  Kovacs P;  Krohn K;  Kronberg J;  Kukushkina V;  Kutalik Z;  Lee B;  Loeffler M;  Marigorta UM;  Mei H;  Milani L;  Montgomery GW;  Müller-Nurasyid M;  Nauck M;  Nivard MG;  Penninx B;  Perola M;  Pervjakova N;  Pierce BL;  Powell J;  Prokisch H;  Psaty BM;  Ripatti S;  Rotzschke O;  Rüeger S;  Saha A;  Scholz M;  Schramm K;  Seppälä I;  Slagboom EP;  Stehouwer CDA;  Stumvoll M;  Sullivan P;  ‘t Hoen PAC;  Thiery J;  Tong L;  Tönjes A;  van Dongen J;  van Iterson M;  van Meurs J;  Veldink JH;  Verlouw J;  Visscher PM;  Völker U;  Westra HJ;  Wijmenga C;  Yaghootka H;  Yang J;  Zeng B;  Zhang F;  Epstein MP;  Yang J, 2023, 'OTTERS: a powerful TWAS framework leveraging summary-level reference data', Nature Communications, 14, http://dx.doi.org/10.1038/s41467-023-36862-w
Xue A;  Yazar S;  Neavin D;  Powell JE, 2023, 'Pitfalls and opportunities for applying latent variables in single-cell eQTL analyses', Genome Biology, 24, http://dx.doi.org/10.1186/s13059-023-02873-5
Sarrafha L;  Neavin DR;  Parfitt GM;  Kruglikov IA;  Whitney K;  Reyes R;  Coccia E;  Kareva T;  Goldman C;  Tipon R;  Croft G;  Crary JF;  Powell JE;  Blanchard J;  Ahfeldt T, 2023, 'Novel human pluripotent stem cell-derived hypothalamus organoids demonstrate cellular diversity', Iscience, 26, http://dx.doi.org/10.1016/j.isci.2023.107525
Cuomo ASE;  Nathan A;  Raychaudhuri S;  MacArthur DG;  Powell JE, 2023, 'Single-cell genomics meets human genetics', Nature Reviews Genetics, 24,  pp. 535 - 549, http://dx.doi.org/10.1038/s41576-023-00599-5
Lim J;  Chin V;  Fairfax K;  Moutinho C;  Suan D;  Ji H;  Powell JE, 2023, 'Transitioning single-cell genomics into the clinic', Nature Reviews Genetics, 24,  pp. 573 - 584, http://dx.doi.org/10.1038/s41576-023-00613-w
Sikkema L;  Ramírez-Suástegui C;  Strobl DC;  Gillett TE;  Zappia L;  Madissoon E;  Markov NS;  Zaragosi LE;  Ji Y;  Ansari M;  Arguel MJ;  Apperloo L;  Banchero M;  Bécavin C;  Berg M;  Chichelnitskiy E;  Chung MI;  Collin A;  Gay ACA;  Gote-Schniering J;  Hooshiar Kashani B;  Inecik K;  Jain M;  Kapellos TS;  Kole TM;  Leroy S;  Mayr CH;  Oliver AJ;  von Papen M;  Peter L;  Taylor CJ;  Walzthoeni T;  Xu C;  Bui LT;  De Donno C;  Dony L;  Faiz A;  Guo M;  Gutierrez AJ;  Heumos L;  Huang N;  Ibarra IL;  Jackson ND;  Kadur Lakshminarasimha Murthy P;  Lotfollahi M;  Tabib T;  Talavera-López C;  Travaglini KJ;  Wilbrey-Clark A;  Worlock KB;  Yoshida M;  Chen Y;  Hagood JS;  Agami A;  Horvath P;  Lundeberg J;  Marquette CH;  Pryhuber G;  Samakovlis C;  Sun X;  Ware LB;  Zhang K;  van den Berge M;  Bossé Y;  Desai TJ;  Eickelberg O;  Kaminski N;  Krasnow MA;  Lafyatis R;  Nikolic MZ;  Powell JE;  Rajagopal J;  Rojas M;  Rozenblatt-Rosen O;  Seibold MA;  Sheppard D;  Shepherd DP;  Sin DD;  Timens W;  Tsankov AM;  Whitsett J;  Xu Y;  Banovich NE;  Barbry P;  Duong TE;  Falk CS;  Meyer KB;  Kropski JA;  Pe’er D;  Schiller HB;  Tata PR;  Schultze JL;  Teichmann SA;  Misharin AV;  Nawijn MC;  Luecken MD;  Theis FJ, 2023, 'An integrated cell atlas of the lung in health and disease', Nature Medicine, 29,  pp. 1563 - 1577, http://dx.doi.org/10.1038/s41591-023-02327-2
Grimm L;  Mason E;  Yu H;  Dudczig S;  Panara V;  Chen T;  Bower NI;  Paterson S;  Rondon Galeano M;  Kobayashi S;  Senabouth A;  Lagendijk AK;  Powell J;  Smith KA;  Okuda KS;  Koltowska K;  Hogan BM, 2023, 'Single-cell analysis of lymphatic endothelial cell fate specification and differentiation during zebrafish development', EMBO Journal, 42, http://dx.doi.org/10.15252/embj.2022112590
Ballinger ML;  Pattnaik S;  Mundra PA;  Zaheed M;  Rath E;  Priestley P;  Baber J;  Ray-Coquard I;  Isambert N;  Causeret S;  van der Graaf WTA;  Puri A;  Duffaud F;  Le Cesne A;  Seddon B;  Chandrasekar C;  Schiffman JD;  Brohl AS;  James PA;  Kurtz JE;  Penel N;  Myklebost O;  Meza-Zepeda LA;  Pickett H;  Kansara M;  Waddell N;  Kondrashova O;  Pearson JV;  Barbour AP;  Li S;  Nguyen TL;  Fatkin D;  Graham RM;  Giannoulatou E;  Green MJ;  Kaplan W;  Ravishankar S;  Copty J;  Powell JE;  Cuppen E;  van Eijk K;  Veldink J;  Ahn JH;  Kim JE;  Lor Randall R;  Tucker K;  Judson I;  Sarin R;  Ludwig T;  Genin E;  Deleuze JF;  Haber M;  Marshall G;  Cairns MJ;  Blay JY;  Thomas DM, 2023, 'Heritable defects in telomere and mitotic function selectively predispose to sarcomas', Science, 379,  pp. 253 - 260, http://dx.doi.org/10.1126/science.abj4784
Brown M;  Greenwood E;  Gibson G, 2023, 'Effect of all-but-one conditional analysis for eQTL isolation in peripheral blood', Genetics, 223, http://dx.doi.org/10.1093/genetics/iyac162
Khoo WH;  Jackson K;  Phetsouphanh C;  Zaunders JJ;  Alquicira-Hernandez J;  Yazar S;  Ruiz-Diaz S;  Singh M;  Dhenni R;  Kyaw W;  Tea F;  Merheb V;  Lee FXZ;  Burrell R;  Howard-Jones A;  Koirala A;  Zhou L;  Yuksel A;  Catchpoole DR;  Lai CL;  Vitagliano TL;  Rouet R;  Christ D;  Tang B;  West NP;  George S;  Gerrard J;  Croucher PI;  Kelleher AD;  Goodnow CG;  Sprent JD;  Powell JE;  Brilot F;  Nanan R;  Hsu PS;  Deenick EK;  Britton PN;  Phan TG, 2023, 'Tracking the clonal dynamics of SARS-CoV-2-specific T cells in children and adults with mild/asymptomatic COVID-19', Clinical Immunology, 246, http://dx.doi.org/10.1016/j.clim.2022.109209
Tyebally R;  Xue A;  Powell JE, 2023, 'The potential clinical impact of cell type-specific genetic regulation: Crohn's disease', CLINICAL AND TRANSLATIONAL MEDICINE, 13, http://dx.doi.org/10.1002/ctm2.1474
Wilson SB;  Howden SE;  Vanslambrouck JM;  Dorison A;  Alquicira-Hernandez J;  Powell JE;  Little MH, 2022, 'DevKidCC allows for robust classification and direct comparisons of kidney organoid datasets', Genome Medicine, 14, http://dx.doi.org/10.1186/s13073-022-01023-z
Senabouth A;  Daniszewski M;  Lidgerwood GE;  Liang HH;  Hernández D;  Mirzaei M;  Keenan SN;  Zhang R;  Han X;  Neavin D;  Rooney L;  Lopez Sanchez MIG;  Gulluyan L;  Paulo JA;  Clarke L;  Kearns LS;  Gnanasambandapillai V;  Chan CL;  Nguyen U;  Steinmann AM;  McCloy RA;  Farbehi N;  Gupta VK;  Mackey DA;  Bylsma G;  Verma N;  MacGregor S;  Watt MJ;  Guymer RH;  Powell JE;  Hewitt AW;  Pébay A, 2022, 'Transcriptomic and proteomic retinal pigment epithelium signatures of age-related macular degeneration', Nature Communications, 13, http://dx.doi.org/10.1038/s41467-022-31707-4
Phipson B;  Sim CB;  Porrello ER;  Hewitt AW;  Powell J;  Oshlack A, 2022, 'propeller: testing for differences in cell type proportions in single cell data', Bioinformatics, 38,  pp. 4720 - 4726, http://dx.doi.org/10.1093/bioinformatics/btac582
Yazar S;  Powell JE, 2022, 'Single-cell expression Quantitative Trait Loci: T-cell immunology teams up with statistical genetics', Immunology and Cell Biology, 100,  pp. 588 - 590, http://dx.doi.org/10.1111/imcb.12577
Patel B;  Kleeman SO;  Neavin D;  Powell J;  Baskozos G;  Ng M;  Ahmed WUR;  Bennett DL;  Schmid AB;  Furniss D;  Wiberg A, 2022, 'Shared genetic susceptibility between trigger finger and carpal tunnel syndrome: a genome-wide association study', Lancet Rheumatology, 4,  pp. e556 - e565, http://dx.doi.org/10.1016/S2665-9913(22)00180-1
Daniszewski M;  Senabouth A;  Liang HH;  Han X;  Lidgerwood GE;  Hernández D;  Sivakumaran P;  Clarke JE;  Lim SY;  Lees JG;  Rooney L;  Gulluyan L;  Souzeau E;  Graham SL;  Chan CL;  Nguyen U;  Farbehi N;  Gnanasambandapillai V;  McCloy RA;  Clarke L;  Kearns LS;  Mackey DA;  Craig JE;  MacGregor S;  Powell JE;  Pébay A;  Hewitt AW, 2022, 'Retinal ganglion cell-specific genetic regulation in primary open-angle glaucoma', Cell Genomics, 2, http://dx.doi.org/10.1016/j.xgen.2022.100142
Yazar S;  Alquicira-Hernandez J;  Wing K;  Senabouth A;  Gordon MG;  Andersen S;  Lu Q;  Rowson A;  Taylor TRP;  Clarke L;  Maccora K;  Chen C;  Cook AL;  Ye CJ;  Fairfax KA;  Hewitt AW;  Powell JE, 2022, 'Single-cell eQTL mapping identifies cell type-specific genetic control of autoimmune disease', Science, 376, http://dx.doi.org/10.1126/science.abf3041
Zammit NW;  McDowell J;  Warren J;  Muskovic W;  Gamble J;  Shi YC;  Kaczorowski D;  Chan CL;  Powell J;  Ormandy C;  Brown D;  Oakes SR;  Grey ST, 2022, 'TNFAIP3 Reduction-of-Function Drives Female Infertility and CNS Inflammation', Frontiers in Immunology, 13, http://dx.doi.org/10.3389/fimmu.2022.811525
Talenti A;  Powell J;  Hemmink JD;  Cook EAJ;  Wragg D;  Jayaraman S;  Paxton E;  Ezeasor C;  Obishakin ET;  Agusi ER;  Tijjani A;  Amanyire W;  Muhanguzi D;  Marshall K;  Fisch A;  Ferreira BR;  Qasim A;  Chaudhry U;  Wiener P;  Toye P;  Morrison LJ;  Connelley T;  Prendergast JGD, 2022, 'A cattle graph genome incorporating global breed diversity.', Nat Commun, 13,  pp. 910, http://dx.doi.org/10.1038/s41467-022-28605-0
Chin V;  Arora H;  Senabouth A;  Hernandez JA;  McCloy R;  Simes J;  Boyer M;  Hogg P;  Young J;  Joshua A;  Brown B;  Watkins N;  Powell J, 2022, 'EP16.03-041 Single Cell RNA Sequencing Reveals Phenotypic Predispositions to Developing Lung Cancer in Never-Smokers', Journal of Thoracic Oncology, 17,  pp. S608 - S608, http://dx.doi.org/10.1016/j.jtho.2022.07.1102
Bui LT;  Winters NI;  Chung MI;  Joseph C;  Gutierrez AJ;  Habermann AC;  Adams TS;  Schupp JC;  Poli S;  Peter LM;  Taylor CJ;  Blackburn JB;  Richmond BW;  Nicholson AG;  Rassl D;  Wallace WA;  Rosas IO;  Jenkins RG;  Kaminski N;  Kropski JA;  Banovich NE;  Misharin AV;  Tsankov AM;  Spira A;  Barbry P;  Brazma A;  Samakovlis C;  Shepherd DP;  Rawlins EL;  Theis FJ;  Griffonnet J;  Lee H;  Schiller HB;  Hofman P;  Powell JE;  Schultze JL;  Whitsett J;  Choi J;  Lundeberg J;  Ordovas-Montanes J;  Rajagopal J;  Meyer KB;  Krasnow MA;  Saeb‐Parsy K;  Zhang K;  Lafyatis R;  Leroy S;  Haniffa M;  Nawijn MC;  Nikolić MZ;  van den Berge M;  Kuhnemund M;  Marquette CH;  Von Papen M;  Eickelberg O;  Rosenblatt-Rosen O;  Reyfman PA;  Pe’er D;  Horvath P;  Tata PR;  Regev A;  Rojas M;  Seibold MA;  Shalek AK;  Spence JR;  Teichmann SA;  Quake S;  Duong TE;  Biancalani T;  Desai T;  Sun X;  Zaragosi LE, 2021, 'Chronic lung diseases are associated with gene expression programs favoring SARS-CoV-2 entry and severity', Nature Communications, 12, http://dx.doi.org/10.1038/s41467-021-24467-0
Wu SZ;  Roden DL;  Al-Eryani G;  Bartonicek N;  Harvey K;  Cazet AS;  Chan CL;  Junankar S;  Hui MN;  Millar EA;  Beretov J;  Horvath L;  Joshua AM;  Stricker P;  Wilmott JS;  Quek C;  Long GV;  Scolyer RA;  Yeung BZ;  Segara D;  Mak C;  Warrier S;  Powell JE;  O’Toole S;  Lim E;  Swarbrick A, 2021, 'Cryopreservation of human cancers conserves tumour heterogeneity for single-cell multi-omics analysis', Genome Medicine, 13, http://dx.doi.org/10.1186/s13073-021-00885-z
Muskovic W;  Powell JE, 2021, 'DropletQC: improved identification of empty droplets and damaged cells in single-cell RNA-seq data', Genome Biology, 22, http://dx.doi.org/10.1186/s13059-021-02547-0
Mills MC;  Tropf FC;  Brazel DM;  van Zuydam N;  Vaez A;  Agbessi M;  Ahsan H;  Alves I;  Andiappan AK;  Arindrarto W;  Awadalla P;  Battle A;  Beutner F;  Jan Bonder M;  Boomsma DI;  Christiansen MW;  Claringbould A;  Deelen P;  Esko T;  Favé MJ;  Franke L;  Frayling T;  Gharib SA;  Gibson G;  Heijmans BT;  Hemani G;  Jansen R;  Kähönen M;  Kalnapenkis A;  Kasela S;  Kettunen J;  Kim Y;  Kirsten H;  Kovacs P;  Krohn K;  Kronberg J;  Kukushkina V;  Kutalik Z;  Lee B;  Lehtimäki T;  Loeffler M;  Marigorta UM;  Mei H;  Milani L;  Montgomery GW;  Müller-Nurasyid M;  Nauck M;  Nivard MG;  Penninx BWJH;  Perola M;  Pervjakova N;  Pierce BL;  Powell J;  Prokisch H;  Psaty BM;  Raitakari OT;  Ripatti S;  Rotzschke O;  Rüeger S;  Saha A;  Scholz M;  Schramm K;  Seppälä I;  Slagboom EP;  Stehouwer CDA;  Stumvoll M;  Sullivan P;  ‘t Hoen PAC;  Teumer A;  Thiery J;  Tong L;  Tönjes A;  van Dongen J;  van Iterson M;  van Meurs J;  Veldink JH;  Verlouw J;  Visscher PM;  Völker U;  Võsa U;  Westra HJ;  Wijmenga C;  Yaghootkar H;  Yang J;  Zeng B;  Zhang F;  Akimova ET;  Bergmann S;  Boardman JD;  Brumat M;  Buring JE;  Cesarini D;  Chasman DI;  Chavarro JE;  Cocca M;  Concas MP;  Davey-Smith G;  Davies G;  Deary IJ;  Esko T, 2021, 'Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour', Nature Human Behaviour, 5,  pp. 1717 - 1730, http://dx.doi.org/10.1038/s41562-021-01135-3
Shen S;  Sun Y;  Matsumoto M;  Shim WJ;  Sinniah E;  Wilson SB;  Werner T;  Wu Z;  Bradford ST;  Hudson J;  Little MH;  Powell J;  Nguyen Q;  Palpant NJ, 2021, 'Integrating single-cell genomics pipelines to discover mechanisms of stem cell differentiation', Trends in Molecular Medicine, 27,  pp. 1135 - 1158, http://dx.doi.org/10.1016/j.molmed.2021.09.006
Neavin D;  Nguyen Q;  Daniszewski MS;  Liang HH;  Chiu HS;  Wee YK;  Senabouth A;  Lukowski SW;  Crombie DE;  Lidgerwood GE;  Hernández D;  Vickers JC;  Cook AL;  Palpant NJ;  Pébay A;  Hewitt AW;  Powell JE, 2021, 'Single cell eQTL analysis identifies cell type-specific genetic control of gene expression in fibroblasts and reprogrammed induced pluripotent stem cells', Genome Biology, 22, http://dx.doi.org/10.1186/s13059-021-02293-3
Tuong ZK;  Lukowski SW;  Nguyen QH;  Chandra J;  Zhou C;  Gillinder K;  Bashaw AA;  Ferdinand JR;  Stewart BJ;  Teoh SM;  Hanson SJ;  Devitt K;  Clatworthy MR;  Powell JE;  Frazer IH, 2021, 'A model of impaired Langerhans cell maturation associated with HPV induced epithelial hyperplasia', Iscience, 24, http://dx.doi.org/10.1016/j.isci.2021.103326
Currant H;  Hysi P;  Fitzgerald TW;  Gharahkhani P;  Bonnemaijer PWM;  Senabouth A;  Hewitt AW;  Atan D;  Aung T;  Charng J;  Choquet H;  Craig J;  Khaw PT;  Klaver CCW;  Kubo M;  Ong JS;  Pasquale LR;  Reisman CA;  Daniszewski M;  Powell JE;  Pébay A;  Simcoe MJ;  Thiadens AAHJ;  van Duijn CM;  Yazar S;  Jorgenson E;  MacGregor S;  Hammond CJ;  Mackey DA;  Wiggs JL;  Foster PJ;  Patel PJ;  Birney E;  Khawaja AP, 2021, 'Erratum: Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images (PLoS Genet (2021) 17:5 (e1009497) DOI: 10.1371/journal.pgen.1009497)', Plos Genetics, 17, http://dx.doi.org/10.1371/journal.pgen.1009858
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